Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,924,974	T→C	T103A (ACC→GCC)	syd ←	SecY‑interacting protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,924,974	0	T	C	100.0%	330.9 / NA	88	T103A (ACC→GCC)	syd	SecY‑interacting protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/51); total (37/51)

ATTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGTTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACATTTTGTTCCC  >  NC_000913/2924837‑2925108

aTTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGctt                                                                                                                                      >  2:1598946/1‑140 (MQ=255)

aTTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGctt                                                                                                                                      >  1:656960/1‑140 (MQ=255)

aTTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGctt                                                                                                                                      >  1:1105506/1‑140 (MQ=255)

aTTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGctt                                                                                                                                      >  1:1148943/1‑140 (MQ=255)

      cacCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTgcagca                                                                                                                                <  2:60560/140‑1 (MQ=255)

        ccGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAAt                                                                                                                              >  2:1303345/1‑140 (MQ=255)

         cGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATg                                                                                                                             >  1:1041574/1‑140 (MQ=255)

          gagaTGCCCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGt                                                                                                                            <  1:148142/140‑1 (MQ=255)

          gagaTGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGt                                                                                                                            >  1:1137463/1‑140 (MQ=255)

          gagaTGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGt                                                                                                                            >  1:1467263/1‑140 (MQ=255)

           agaTGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGta                                                                                                                           >  2:1103324/1‑139 (MQ=255)

           agaTGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTc                                                                                                                           >  2:352061/1‑140 (MQ=255)

              tGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGt                                                                                                                        >  2:544301/1‑140 (MQ=255)

                aCCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGG‑‑GGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGa                                                                                                                    <  1:822179/140‑1 (MQ=255)

                  ctctAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGa                                                                                                                    <  2:1148943/140‑1 (MQ=255)

                     tAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGatat                                                                                                                 >  2:1682240/1‑140 (MQ=255)

                            tcttcCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCaaa                                                                                                          >  2:561571/1‑140 (MQ=255)

                            tcttcCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCaaa                                                                                                          >  1:1519336/1‑140 (MQ=255)

                            tcttcCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCaaa                                                                                                          <  1:1471598/140‑1 (MQ=255)

                            tcttcCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCaaa                                                                                                          <  2:157247/140‑1 (MQ=255)

                               tcCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTg                                                                                                       >  2:944672/1‑140 (MQ=255)

                                 cAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcg                                                                                                     <  2:48324/140‑1 (MQ=255)

                                 cAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcg                                                                                                     <  2:1240977/140‑1 (MQ=255)

                                 cAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcg                                                                                                     <  2:970516/140‑1 (MQ=255)

                                 cAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcg                                                                                                     <  1:413729/140‑1 (MQ=255)

                                 cAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcg                                                                                                     <  1:412513/140‑1 (MQ=255)

                                  aGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTgcgc                                                                                                    <  1:944672/140‑1 (MQ=255)

                                   gCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGcgcg                                                                                                   >  2:831354/1‑140 (MQ=255)

                                   gCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGcgcg                                                                                                   >  1:370341/1‑140 (MQ=255)

                                      tCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGc                                                                                                >  1:871344/1‑140 (MQ=255)

                                        gcgATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCat                                                                                              <  2:1105506/140‑1 (MQ=255)

                                         cgATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCata                                                                                             >  2:655508/1‑140 (MQ=255)

                                            tAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATcc                                                                                          <  1:1191565/140‑1 (MQ=255)

                                               aTAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCg                                                                                       <  1:352061/140‑1 (MQ=255)

                                                    gtgGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCaaa                                                                                  >  2:519935/1‑140 (MQ=255)

                                                    gtgGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCaaa                                                                                  <  2:656960/140‑1 (MQ=255)

                                                     tgGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAAc                                                                                 >  1:631514/1‑140 (MQ=255)

                                                     tgGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAAc                                                                                 >  1:211435/1‑140 (MQ=255)

                                                      gggCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACt                                                                                >  2:876814/1‑140 (MQ=255)

                                                      gggCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACt                                                                                <  1:332875/140‑1 (MQ=255)

                                                      gggCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACt                                                                                <  1:1098893/140‑1 (MQ=255)

                                                       ggcggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCg                                                                                       <  1:462361/132‑1 (MQ=255)

                                                       ggcggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCg                                                                                       >  2:462361/1‑132 (MQ=255)

                                                        gcggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGa                                                                              >  2:1198902/1‑140 (MQ=255)

                                                        gcggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGa                                                                              >  2:759187/1‑140 (MQ=255)

                                                        gcggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGa                                                                              >  1:1580428/1‑140 (MQ=255)

                                                         cggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAg                                                                             <  1:1655678/140‑1 (MQ=255)

                                                         cggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAg                                                                             <  2:871344/140‑1 (MQ=255)

                                                         cggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAg                                                                             <  1:655508/140‑1 (MQ=255)

                                                          ggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGt                                                                            <  2:462752/140‑1 (MQ=255)

                                                          ggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGt                                                                            <  1:1303345/140‑1 (MQ=255)

                                                          ggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGt                                                                            <  1:825162/140‑1 (MQ=255)

                                                          ggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGt                                                                            >  2:556946/1‑140 (MQ=255)

                                                          ggcAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGt                                                                            <  1:556946/140‑1 (MQ=255)

                                                              gTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGta                                                                        <  1:1329538/140‑1 (MQ=255)

                                                                tttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGtata                                                                      <  1:1345081/140‑1 (MQ=255)

                                                                tttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGtata                                                                      <  2:631514/140‑1 (MQ=255)

                                                                tttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGtata                                                                      <  1:1198902/140‑1 (MQ=255)

                                                                 ttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATaa                                                                     <  2:1682058/140‑1 (MQ=255)

                                                                 ttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATaa                                                                     <  1:876814/140‑1 (MQ=255)

                                                                 ttAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATaa                                                                     <  1:1598946/140‑1 (MQ=255)

                                                                    gCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAg                                                                             <  1:1189005/129‑1 (MQ=255)

                                                                    gCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAg                                                                             >  2:1189005/1‑129 (MQ=255)

                                                                        tttCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTAt                                                              <  1:561571/140‑1 (MQ=255)

                                                                         ttCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATg                                                             >  2:1600832/1‑140 (MQ=255)

                                                                           cTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGaa                                                           <  2:1580428/140‑1 (MQ=255)

                                                                             gAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAAtt                                                         <  2:1467263/140‑1 (MQ=255)

                                                                                  aCCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTggg                                                    <  2:977140/140‑1 (MQ=255)

                                                                                  aCCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTggg                                                    <  2:370341/140‑1 (MQ=255)

                                                                                   ccAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGt                                                   <  1:883327/140‑1 (MQ=255)

                                                                                        tGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTAt                                              >  1:1572200/1‑140 (MQ=255)

                                                                                          aCCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTggg                                                    >  2:656579/1‑132 (MQ=255)

                                                                                          aCCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTggg                                                    <  1:656579/132‑1 (MQ=255)

                                                                                          aCCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATca                                            >  1:1517878/1‑140 (MQ=255)

                                                                                           ccAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATcac                                           >  1:1029998/1‑140 (MQ=255)

                                                                                           ccAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATcac                                           <  2:1041574/140‑1 (MQ=255)

                                                                                              aTCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAat                                        >  1:1698578/1‑140 (MQ=255)

                                                                                                        ccTGCACCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAgcg                              >  2:1284283/1‑140 (MQ=255)

                                                                                                             aCCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATcac                                           <  1:823446/122‑1 (MQ=255)

                                                                                                             aCCCGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATcac                                           >  2:823446/1‑122 (MQ=255)

                                                                                                             aCCCCACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTc                         >  1:905824/1‑140 (MQ=255)

                                                                                                               ccGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCaa                       >  1:1317119/1‑140 (MQ=255)

                                                                                                                cGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAAc                      <  1:413568/140‑1 (MQ=255)

                                                                                                                cGACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAAc                      <  1:977986/140‑1 (MQ=255)

                                                                                                                 gACGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAAcc                     >  2:341459/1‑140 (MQ=255)

                                                                                                                  aCGGAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACcg                    <  1:1490089/140‑1 (MQ=255)

                                                                                                                     gAAGTCGTCTTCACTCCAGGCTTGCAGCAATGTAAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGt                 <  1:1103324/140‑1 (MQ=255)

                                                                                                                       aGTCGTCTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGttt               <  1:759187/140‑1 (MQ=255)

                                                                                                                            tcTTCACTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACAtt          >  2:137947/1‑140 (MQ=255)

                                                                                                                                 aCTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACATTTTGtt     <  1:1284283/140‑1 (MQ=255)

                                                                                                                                 aCTCCAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACATTTTGtt     <  1:1223059/140‑1 (MQ=255)

                                                                                                                                    ccAGGCTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACATTTTGTTccc  <  2:905824/140‑1 (MQ=255)

ATTACACACCGAGATGACCTCTAACTCTTCTTCCAGCGTCGCGATAAATAGTGTGGGCGGCAGTTTTAGCCTTTTCTGAGTCACCAGATGACCAATCAGATTTTCCTGCACCCGACGGAAGTCGTCTTCACTCCAGGTTTGCAGCAATGTCAGTTTGATATCGCCAAACTGCGCGTGCATATCCCCGGCAAACTGAGTCGTATAAAAGGTATGAATTGTGGGTTGTATCACAATATCAAAAGCGCGTTCAACCGCGTTTACATTTTGTTCCC  >  NC_000913/2924837‑2925108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A