Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,927,705	T→C	intergenic (+33/‑524)	ppnN → / → sdaC	nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,927,705	0	T	C	100.0%	322.6 / NA	87	intergenic (+33/‑524)	ppnN/sdaC	nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (49/38); total (49/38)

ATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCT  >  NC_000913/2927571‑2927837

aTTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTtct                                                                                                                                 >  2:544316/1‑140 (MQ=255)

   aTGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGt                                                                                                                              >  2:417119/1‑140 (MQ=255)

       gtcgtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGttttt                                                                                                                          >  1:204653/1‑140 (MQ=255)

        tcgtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTg                                                                                                                         >  2:429384/1‑140 (MQ=255)

        tcgtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTg                                                                                                                         <  1:1258083/140‑1 (MQ=255)

         cgtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCGCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTgg                                                                                                                        <  1:77423/140‑1 (MQ=255)

          gtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGt                                                                                                                       <  1:728459/140‑1 (MQ=255)

          gtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGt                                                                                                                       >  1:1140941/1‑140 (MQ=255)

          gtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGt                                                                                                                       <  2:812354/140‑1 (MQ=255)

          gtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGt                                                                                                                       <  1:885918/140‑1 (MQ=255)

          gtATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTAAGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGt                                                                                                                       >  1:769639/1‑140 (MQ=255)

           tATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTc                                                                                                                      <  1:1209024/140‑1 (MQ=255)

                acgacCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTa                                                                                                                 >  2:886476/1‑140 (MQ=255)

                 cgacCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTAc                                                                                                                >  2:875467/1‑140 (MQ=255)

                  gacCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACt                                                                                                               >  1:787506/1‑140 (MQ=255)

                   acCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTACTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtc                                                                                                              >  1:937146/1‑140 (MQ=255)

                    ccTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtca                                                                                                             >  1:488648/1‑140 (MQ=255)

                     cTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtcat                                                                                                            >  2:1369558/1‑140 (MQ=255)

                     cTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtcat                                                                                                            >  2:255883/1‑140 (MQ=255)

                     cTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtcat                                                                                                            >  2:176899/1‑140 (MQ=255)

                     cTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtcat                                                                                                            >  2:581825/1‑140 (MQ=255)

                     cTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACtcat                                                                                                            >  2:957597/1‑140 (MQ=255)

                        cTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCaa                                                                                                         <  1:1323563/140‑1 (MQ=255)

                        cTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCaa                                                                                                         >  2:1030855/1‑140 (MQ=255)

                              ggTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatt                                                                                                   >  2:1345869/1‑140 (MQ=255)

                              ggTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatt                                                                                                   >  2:28441/1‑140 (MQ=255)

                              ggTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatt                                                                                                   >  2:216423/1‑140 (MQ=255)

                              ggTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACgcatt                                                                                                   >  2:1300779/1‑140 (MQ=255)

                                ttttGTTGCCCAACATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttc                                                                                                 >  2:46523/1‑140 (MQ=255)

                                 tttGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCTGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttca                                                                                                <  1:1030855/140‑1 (MQ=255)

                                 tttGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttca                                                                                                <  2:541521/140‑1 (MQ=255)

                                  ttgttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttcat                                                                                               <  1:339114/140‑1 (MQ=255)

                                  ttgttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttcat                                                                                               >  1:476868/1‑140 (MQ=255)

                                  ttgttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttcat                                                                                               >  1:1060366/1‑140 (MQ=255)

                                  ttgttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttcat                                                                                               <  1:581825/140‑1 (MQ=255)

                                   tgttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACtcatttcatt                                                                                              <  1:46173/140‑1 (MQ=255)

                                     ttgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTg                                                                                            <  1:1369558/140‑1 (MQ=255)

                                      tgCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGt                                                                                           <  2:1140941/140‑1 (MQ=255)

                                        cccAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTta                                                                                         >  2:373529/1‑140 (MQ=255)

                                         ccAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTtat                                                                                        <  2:204653/140‑1 (MQ=255)

                                          cAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTtata                                                                                       >  1:1227612/1‑140 (MQ=255)

                                             cATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGa                                                                                    <  2:763581/140‑1 (MQ=255)

                                             cATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGa                                                                                    <  2:764377/140‑1 (MQ=255)

                                             cATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGa                                                                                    >  1:1020368/1‑140 (MQ=255)

                                              aTCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGaa                                                                                   <  1:875467/140‑1 (MQ=255)

                                              aTCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGaa                                                                                   <  1:1300779/140‑1 (MQ=255)

                                                 gTATGAAGTTGGCCGGCTCAGCCTACATCCCTTCCTCCGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCTGGGCTTTCTCGTTTTTGGTCACTTCCTCATCAACTCATTTCATTTGTTATACGAATGt                                                                                <  2:937146/140‑1 (MQ=255)

                                                       aGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTa                                                                          >  2:300582/1‑140 (MQ=255)

                                                          tGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTac                                                                         >  2:965726/1‑138 (MQ=255)

                                                          tGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTac                                                                         <  1:965726/138‑1 (MQ=255)

                                                           gCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTaccac                                                                      >  1:714817/1‑140 (MQ=255)

                                                            ccAGGCTCAGCCTAGATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTGCTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTaccacc                                                                     >  2:202608/1‑140 (MQ=255)

                                                            ccAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTaccacc                                                                     <  1:429384/140‑1 (MQ=255)

                                                                gCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCa                                                                 <  2:1020368/140‑1 (MQ=255)

                                                                gCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCa                                                                 <  2:644368/140‑1 (MQ=255)

                                                                gCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCa                                                                 >  1:250282/1‑140 (MQ=255)

                                                                   cAGCCTGCATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCAcgc                                                              >  2:813553/1‑140 (MQ=255)

                                                                    aGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCAcgcg                                                             >  1:1138855/1‑140 (MQ=255)

                                                                              ccTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGTCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatca                                                   >  2:18910/1‑140 (MQ=255)

                                                                               cTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcat                                                  <  1:28441/140‑1 (MQ=255)

                                                                                ttGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcatc                                                 <  1:557064/140‑1 (MQ=255)

                                                                                ttGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcatc                                                 >  1:228719/1‑140 (MQ=255)

                                                                                ttGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcatc                                                 >  1:266085/1‑140 (MQ=255)

                                                                                ttGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcatc                                                 >  2:1083628/1‑140 (MQ=255)

                                                                                ttGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcatc                                                 >  2:1338198/1‑140 (MQ=255)

                                                                                 tGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcat                                                  >  1:1303107/1‑138 (MQ=255)

                                                                                 tGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcat                                                  <  2:1303107/138‑1 (MQ=255)

                                                                                 tGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATAtcatca                                                <  1:957597/140‑1 (MQ=255)

                                                                                 tGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATAtcatca                                                <  1:176899/140‑1 (MQ=255)

                                                                                  gCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATcac                                               <  1:1338198/140‑1 (MQ=255)

                                                                                    tACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAg                                             >  1:541867/1‑140 (MQ=255)

                                                                                     aCGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcat                                                  >  1:785625/1‑134 (MQ=255)

                                                                                     aCGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATatcat                                                  <  2:785625/134‑1 (MQ=255)

                                                                                       gAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTa                                          >  2:948679/1‑140 (MQ=255)

                                                                                         aaTCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAat                                        <  1:202608/140‑1 (MQ=255)

                                                                                           tCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAatat                                      <  1:12147/140‑1 (MQ=255)

                                                                                             tGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGt                                    >  1:517125/1‑140 (MQ=255)

                                                                                               cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCa                                  <  1:46523/140‑1 (MQ=255)

                                                                                               cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCa                                  <  2:787506/140‑1 (MQ=255)

                                                                                               cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCa                                  <  1:422572/140‑1 (MQ=255)

                                                                                                aCGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCAt                                 <  1:374460/140‑1 (MQ=255)

                                                                                                aCGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCAt                                 <  1:373529/140‑1 (MQ=255)

                                                                                                  gTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATAc                               <  1:1083628/140‑1 (MQ=255)

                                                                                                         ccGCTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTAt                        >  2:242127/1‑140 (MQ=255)

                                                                                                            cTCCCCCGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGtt                     >  1:195956/1‑140 (MQ=255)

                                                                                                                 ccGGTGACGTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAAc                >  1:224692/1‑140 (MQ=255)

                                                                                                                         gTTTGTTGCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGt        >  2:44626/1‑140 (MQ=255)

                                                                                                                               tgCCGGGCTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCt  >  1:508015/1‑140 (MQ=255)

ATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCTTGCTACGAAATCTGCACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCT  >  NC_000913/2927571‑2927837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A