Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,929,619 C→T S15F (TCC→TTC)  sdaB → L‑serine deaminase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,929,6190CT100.0% 290.0 / NA 81S15F (TCC→TTC) sdaBL‑serine deaminase II
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/42);  total (39/42)

GCAATCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTCCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGCCAC  >  NC_000913/2929483‑2929755
                                                                                                                                        |                                                                                                                                        
gCAATCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAg                                                                                                                                       <  2:656124/140‑1 (MQ=255)
 cAATCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGt                                                                                                                                      <  2:10407/140‑1 (MQ=255)
   aTCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGtt                                                                                                                                     <  2:396589/139‑1 (MQ=255)
   aTCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGtt                                                                                                                                     >  1:396589/1‑139 (MQ=255)
   aTCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTtc                                                                                                                                    >  1:401407/1‑140 (MQ=255)
      tcCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCa                                                                                                                                 <  2:401407/140‑1 (MQ=255)
       ccGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCAt                                                                                                                                >  1:968205/1‑140 (MQ=255)
       ccGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCAt                                                                                                                                >  2:468895/1‑140 (MQ=255)
       ccGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCAGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCAt                                                                                                                                <  1:1035381/140‑1 (MQ=255)
           aaTCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCg                                                                                                                            <  1:313508/140‑1 (MQ=255)
                 ctACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGAc                                                                                                                      <  2:684211/140‑1 (MQ=255)
                    ctctctGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCaa                                                                                                                   <  2:582575/140‑1 (MQ=255)
                         tGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGaaa                                                                                                              >  2:425212/1‑140 (MQ=255)
                         tGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGaaa                                                                                                              >  1:1032229/1‑140 (MQ=255)
                         tGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGaaa                                                                                                              >  2:278932/1‑140 (MQ=255)
                           ttCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGc                                                                                                            >  1:679755/1‑140 (MQ=255)
                               gCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGt                                                                                                        <  1:388910/140‑1 (MQ=255)
                                cTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTa                                                                                                       >  1:677929/1‑140 (MQ=255)
                                  aaGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTaaa                                                                                                     <  1:278932/140‑1 (MQ=255)
                                   aGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAAc                                                                                                    >  1:723729/1‑140 (MQ=255)
                                     tCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACaa                                                                                                  >  2:1049203/1‑140 (MQ=255)
                                     tCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACaa                                                                                                  >  2:878340/1‑140 (MQ=255)
                                        tttCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAAttt                                                                                               >  2:1098256/1‑140 (MQ=255)
                                          tCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTAc                                                                                             >  2:131709/1‑140 (MQ=255)
                                           cgcgCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTAcc                                                                                            <  1:1098256/140‑1 (MQ=255)
                                                  cTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATc                                                                                     >  1:72502/1‑140 (MQ=255)
                                                      cGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGAt                                                                                 <  2:842130/140‑1 (MQ=255)
                                                      cGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGAt                                                                                 <  2:679755/140‑1 (MQ=255)
                                                             cgcTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGt                                                                          >  1:526907/1‑140 (MQ=255)
                                                               cTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTaa                                                                        >  2:344148/1‑140 (MQ=255)
                                                                ttCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAAc                                                                       <  1:826027/140‑1 (MQ=255)
                                                                ttCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAAc                                                                       <  1:663111/140‑1 (MQ=255)
                                                                            aaCGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGAc                                                           >  2:67256/1‑140 (MQ=255)
                                                                                            tATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           <  2:968205/140‑1 (MQ=255)
                                                                                            tATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           <  2:526907/140‑1 (MQ=255)
                                                                                            tATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           <  2:1032229/140‑1 (MQ=255)
                                                                                             aTGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTggtggt                                          >  2:992764/1‑140 (MQ=255)
                                                                                             aTGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTggtggt                                          >  2:948639/1‑140 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCTACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTg                                        >  2:581801/1‑140 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           >  2:191099/1‑137 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           <  1:191099/137‑1 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGtt                                         >  2:752495/1‑139 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGtt                                         <  1:752495/139‑1 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTg                                        >  2:877825/1‑140 (MQ=255)
                                                                                               gATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTg                                        >  2:925825/1‑140 (MQ=255)
                                                                                                aTTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGa                                       <  1:932898/140‑1 (MQ=255)
                                                                                                 ttAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGAc                                      <  2:723729/140‑1 (MQ=255)
                                                                                                 ttAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGAc                                      <  2:677929/140‑1 (MQ=255)
                                                                                                   aGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgt                                    >  2:641688/1‑140 (MQ=255)
                                                                                                    gCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgtg                                   >  2:257609/1‑140 (MQ=255)
                                                                                                    gCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgtg                                   <  1:67256/140‑1 (MQ=255)
                                                                                                     cGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           <  2:967865/131‑1 (MQ=255)
                                                                                                     cGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGtggtgg                                           >  1:967865/1‑131 (MQ=255)
                                                                                                     cGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgtgt                                  >  2:1043442/1‑140 (MQ=255)
                                                                                                     cGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgtgt                                  >  2:618864/1‑140 (MQ=255)
                                                                                                     cGTATTCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACgtgt                                  >  2:830567/1‑140 (MQ=255)
                                                                                                         ttCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACgg                              >  2:923659/1‑140 (MQ=255)
                                                                                                         ttCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACgg                              >  2:394348/1‑140 (MQ=255)
                                                                                                         ttCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGAGGTTGACGTGTACgg                              >  2:678401/1‑140 (MQ=255)
                                                                                                          tCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgc                             >  1:724054/1‑140 (MQ=255)
                                                                                                          tCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgc                             >  2:697529/1‑140 (MQ=255)
                                                                                                          tCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgc                             >  1:1056279/1‑140 (MQ=255)
                                                                                                          tCGATATTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgc                             >  2:693516/1‑140 (MQ=255)
                                                                                                             atatTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgctcg                          <  2:795977/140‑1 (MQ=255)
                                                                                                             atatTTTCAAAATCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGgctcg                          <  1:697529/140‑1 (MQ=255)
                                                                                                                       aaTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGa                <  1:618864/140‑1 (MQ=255)
                                                                                                                        aTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTGCCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGAc               <  1:150488/140‑1 (MQ=255)
                                                                                                                        aTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGAc               <  2:72502/140‑1 (MQ=255)
                                                                                                                        aTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGAc               <  1:133831/140‑1 (MQ=255)
                                                                                                                        aTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGAc               <  1:468895/140‑1 (MQ=255)
                                                                                                                        aTCGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTAAc               <  2:750297/140‑1 (MQ=255)
                                                                                                                          cGGCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCg             <  1:992764/140‑1 (MQ=255)
                                                                                                                            gCATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGt           >  1:446337/1‑140 (MQ=255)
                                                                                                                             cATTGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTa          <  1:878340/140‑1 (MQ=255)
                                                                                                                               ttGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTaaa        <  2:446337/140‑1 (MQ=255)
                                                                                                                               ttGGCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTaaa        <  1:641688/140‑1 (MQ=255)
                                                                                                                                 ggCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAgg      <  1:257609/140‑1 (MQ=255)
                                                                                                                                 ggCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAgg      >  2:708072/1‑140 (MQ=255)
                                                                                                                                  gCCCTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGc     <  1:25290/140‑1 (MQ=255)
                                                                                                                                   cccTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGcc    <  1:830567/140‑1 (MQ=255)
                                                                                                                                    ccTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGcca   <  1:1049203/140‑1 (MQ=255)
                                                                                                                                     cTTTCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGccac  <  2:465570/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GCAATCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCGCTTCCTCCGTTTTAACGCGATGTATTTCCTATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTCCAGTTCTCATACCGTTGGACCAATGAAAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGTTGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGCCAC  >  NC_000913/2929483‑2929755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A