Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,136,101 T→G T91P (ACC→CCC)  pitB ← metal phosphate:H(+) symporter PitB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,136,1010TG100.0% 321.7 / NA 86T91P (ACC→CCC) pitBmetal phosphate:H(+) symporter PitB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (43/43);  total (43/43)

CGTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGTTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAC  >  NC_000913/3135966‑3136235
                                                                                                                                       |                                                                                                                                      
cgTTGGTTAAACCGATGCCGATGATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAc                                                                                                                                    >  2:1700845/1‑140 (MQ=255)
cgTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAc                                                                                                                                    >  2:640479/1‑140 (MQ=255)
cgTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAc                                                                                                                                    >  2:1434700/1‑140 (MQ=255)
cgTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAc                                                                                                                                    >  1:824345/1‑140 (MQ=255)
cgTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAc                                                                                                                                    >  1:211952/1‑140 (MQ=255)
 gTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAcc                                                                                                                                   >  1:1123577/1‑140 (MQ=255)
 gTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGAcc                                                                                                                                   <  1:1434700/140‑1 (MQ=255)
    ggTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCa                                                                                                                                <  2:1034078/140‑1 (MQ=255)
    ggTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCa                                                                                                                                <  2:1401602/140‑1 (MQ=255)
    ggTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCa                                                                                                                                <  2:1166178/140‑1 (MQ=255)
            cGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGc                                                                                                                        <  2:1123577/140‑1 (MQ=255)
              aTGCCGATGATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGcaa                                                                                                                      <  1:1700845/140‑1 (MQ=255)
              aTGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGcaa                                                                                                                      <  1:956000/140‑1 (MQ=255)
               tGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGcaac                                                                                                                     >  2:62258/1‑140 (MQ=255)
                           cACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         <  2:949168/140‑1 (MQ=255)
                           cACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         <  2:13589/140‑1 (MQ=255)
                           cACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         <  1:1257649/140‑1 (MQ=255)
                           cACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         <  1:853858/140‑1 (MQ=255)
                                aTCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACat                                                                                                    >  1:1693438/1‑140 (MQ=255)
                                 tCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         >  2:81256/1‑134 (MQ=255)
                                 tCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGc                                                                                                         <  1:81256/134‑1 (MQ=255)
                                 tCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACata                                                                                                   >  1:492773/1‑140 (MQ=255)
                                   aaGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATg                                                                                                 <  2:824345/140‑1 (MQ=255)
                                       tgtgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             <  2:798851/140‑1 (MQ=255)
                                       tgtgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             >  1:427294/1‑140 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGTCCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAAt                                                                                           >  2:1059051/1‑140 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCa                                                                                                        <  1:1703407/127‑1 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCa                                                                                                        >  2:1703407/1‑127 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             >  1:18965/1‑138 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             <  2:18965/138‑1 (MQ=255)
                                         tgCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAAt                                                                                           >  1:429081/1‑140 (MQ=255)
                                          gCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATg                                                                                          >  2:1202587/1‑140 (MQ=255)
                                          gCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATg                                                                                          >  2:349164/1‑140 (MQ=255)
                                           cGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             <  2:916493/136‑1 (MQ=255)
                                           cGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             >  1:916493/1‑136 (MQ=255)
                                           cGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATgg                                                                                         >  2:245864/1‑140 (MQ=255)
                                           cGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATgg                                                                                         >  1:907116/1‑140 (MQ=255)
                                                     gCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAAc                                                                               >  1:201385/1‑140 (MQ=255)
                                                        ggTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             <  1:806803/123‑1 (MQ=255)
                                                        ggTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACa                                                                                             >  2:806803/1‑123 (MQ=255)
                                                            aaCCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGt                                                                        >  2:1332807/1‑140 (MQ=255)
                                                             aCCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCTGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTc                                                                       >  2:445525/1‑140 (MQ=255)
                                                             aCCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTc                                                                       <  1:1232324/140‑1 (MQ=255)
                                                             aCCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTc                                                                       <  2:492773/140‑1 (MQ=255)
                                                               cGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCg                                                                     <  2:211952/140‑1 (MQ=255)
                                                                 aagaaCCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGcc                                                                   >  2:215697/1‑140 (MQ=255)
                                                                       cACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGACGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATaa                                                             <  2:810921/140‑1 (MQ=255)
                                                                        aCGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATaa                                                             >  1:1563381/1‑139 (MQ=255)
                                                                        aCGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATaa                                                             <  2:1563381/139‑1 (MQ=255)
                                                                         cGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAaca                                                           >  2:1097311/1‑140 (MQ=255)
                                                                                aGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCaaa                                                    >  1:685312/1‑140 (MQ=255)
                                                                                 ggTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCaaaa                                                   >  2:829977/1‑140 (MQ=255)
                                                                                   ttCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCaaaaaa                                                 >  2:619897/1‑140 (MQ=255)
                                                                                     ccAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGt                                               >  1:72296/1‑140 (MQ=255)
                                                                                      cAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGtt                                              >  2:1556695/1‑140 (MQ=255)
                                                                                             tCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAAt                                       >  2:807374/1‑140 (MQ=255)
                                                                                             tCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAAt                                       >  1:1188400/1‑140 (MQ=255)
                                                                                              cgccgcCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATg                                      >  2:393210/1‑140 (MQ=255)
                                                                                                ccgccAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATgcc                                    <  2:1693438/140‑1 (MQ=255)
                                                                                                ccgccAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATgcc                                    <  2:175633/140‑1 (MQ=255)
                                                                                                      gcagcaTGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATc                              <  2:72296/140‑1 (MQ=255)
                                                                                                       cagcaTGGAAAAGACCATCGCCAGGCCGTTGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATca                             >  1:204986/1‑140 (MQ=255)
                                                                                                         gcaTGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATcacc                           <  2:429081/140‑1 (MQ=255)
                                                                                                            tGGAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACcaca                        <  1:1612241/140‑1 (MQ=255)
                                                                                                             ggAAAAGACCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAg                       <  1:62258/140‑1 (MQ=255)
                                                                                                                    aCCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAg                       <  2:396137/133‑1 (MQ=255)
                                                                                                                    aCCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAg                       >  1:396137/1‑133 (MQ=255)
                                                                                                                    aCCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTtg                >  2:299489/1‑140 (MQ=255)
                                                                                                                    aCCATCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTtg                >  1:1381354/1‑140 (MQ=255)
                                                                                                                        tCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGt            >  1:1574976/1‑140 (MQ=255)
                                                                                                                        tCGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGt            >  1:1413734/1‑140 (MQ=255)
                                                                                                                        tCGCCAGGCCGTGGGGGAACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGTCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGt            >  2:808045/1‑140 (MQ=255)
                                                                                                                         cGCCAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGtt           >  2:429133/1‑140 (MQ=255)
                                                                                                                            cAGGCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCa        <  1:1684741/140‑1 (MQ=255)
                                                                                                                               gCCGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATgg     <  1:895051/140‑1 (MQ=255)
                                                                                                                                ccGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGc    <  1:807374/140‑1 (MQ=255)
                                                                                                                                 tgTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:445525/139‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGTCCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:1059051/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  2:907116/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:215697/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:245864/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:393210/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:581743/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  1:811792/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCa   <  2:1188400/140‑1 (MQ=255)
                                                                                                                                  gTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAc  <  1:1361901/140‑1 (MQ=255)
                                                                                                                                  gTGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAc  <  1:1125950/140‑1 (MQ=255)
                                                                                                                                   tGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAc  <  2:1501607/139‑1 (MQ=255)
                                                                                                                                   tGGGGTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAc  >  1:1501607/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                      
CGTTGGTTAAACCGATGCCGATAATCGCACCAATCAAGGTGTGCGAACTGGAGGCCGGTAAACCGAAGAACCACGTTCCCAGGTTCCAGATAATCGCCGCCAGCAGCATGGAAAAGACCATCGCCAGGCCGTGGGTTGACCCCATATTCAGCAACAAATCGGTTGGCAACATATGGACAATGGCATAGGCAACGCTAAGTCCGCCCAATAACACGCCAAAAAAGTTAAAAAATGCCGCCATCACCACAGCAAGTTGTGGTTGCATGGCAC  >  NC_000913/3135966‑3136235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A