Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,373,657	T→C	intergenic (‑81/+41)	nanA ← / ← nanR	N‑acetylneuraminate lyase/DNA‑binding transcriptional dual regulator NanR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,373,657	0	T	C	100.0%	426.1 / NA	113	intergenic (‑81/+41)	nanA/nanR	N‑acetylneuraminate lyase/DNA‑binding transcriptional dual regulator NanR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (76/37); total (76/37)

Only 100 of 113 total aligned reads displayed.

TGGTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCATACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAGGAT  >  NC_000913/3373524‑3373792

tgGTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGaa                                                                                                                                   <  1:1649743/140‑1 (MQ=255)

tgGTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGaa                                                                                                                                   <  2:1454196/140‑1 (MQ=255)

tgGTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGaa                                                                                                                                   >  2:1649743/1‑140 (MQ=255)

  gTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAg                                                                                                                                 >  1:157871/1‑140 (MQ=255)

     aaaaGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCtt                                                                                                                              <  2:1113740/140‑1 (MQ=255)

            gTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGa                                                                                                                                    >  1:272898/1‑127 (MQ=255)

            gTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGa                                                                                                                                    <  2:272898/127‑1 (MQ=255)

             tCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCg                                                                                                                      >  1:1361286/1‑140 (MQ=255)

             tCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCg                                                                                                                      >  2:1605695/1‑140 (MQ=255)

               aGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGAt                                                                                                                    <  2:1362343/140‑1 (MQ=255)

                     gCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTg                                                                                                                 >  2:1479731/1‑137 (MQ=255)

                     gCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCtt                                                                                                              <  2:793070/140‑1 (MQ=255)

                     gCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCtt                                                                                                              <  1:1602315/140‑1 (MQ=255)

                     gCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCtt                                                                                                              >  1:1589529/1‑140 (MQ=255)

                      cAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTc                                                                                                             >  2:1152168/1‑140 (MQ=255)

                       aGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCa                                                                                                            >  1:1370506/1‑140 (MQ=255)

                              aCGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCtt                                                                                                              >  2:427820/1‑131 (MQ=255)

                              aCGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCtt                                                                                                              <  1:427820/131‑1 (MQ=255)

                              aCGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGt                                                                                                     >  2:615719/1‑140 (MQ=255)

                               cGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTg                                                                                                    >  1:1604385/1‑140 (MQ=255)

                                     gTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCatta                                                                                              >  1:1188333/1‑140 (MQ=255)

                                      tAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCattat                                                                                             <  1:615719/140‑1 (MQ=255)

                                              ttGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCttttt                                                                                     >  2:393287/1‑140 (MQ=255)

                                              ttGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCttttt                                                                                     >  1:1617261/1‑140 (MQ=255)

                                              ttGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCttttt                                                                                     >  1:866003/1‑140 (MQ=255)

                                              ttGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCttttt                                                                                     >  1:1058777/1‑140 (MQ=255)

                                                           ctctGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGa                                                                        >  2:619443/1‑140 (MQ=255)

                                                             ctGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTggtggt                                                                            <  2:1067907/134‑1 (MQ=255)

                                                             ctGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTggtggt                                                                            >  1:1067907/1‑134 (MQ=255)

                                                                 aGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGaaa                                                                  <  1:1152168/140‑1 (MQ=255)

                                                                    gATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCg                                                               <  2:1361286/140‑1 (MQ=255)

                                                                     aTGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGt                                                              >  2:905231/1‑140 (MQ=255)

                                                                     aTGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGt                                                              >  2:647204/1‑140 (MQ=255)

                                                                     aTGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGt                                                              >  2:513849/1‑140 (MQ=255)

                                                                        cTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTAACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGcc                                                           >  2:101031/1‑140 (MQ=255)

                                                                          tGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAg                                                         >  1:1538296/1‑140 (MQ=255)

                                                                            tCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGt                                                       <  2:1538296/140‑1 (MQ=255)

                                                                                aTAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCa                                                   >  2:1435901/1‑140 (MQ=255)

                                                                                    aCGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAgaga                                               <  1:1435901/140‑1 (MQ=255)

                                                                                    aCGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAgaga                                               <  1:1605695/140‑1 (MQ=255)

                                                                                      gATATGACTTTATACATGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACg                                             <  2:157871/140‑1 (MQ=255)

                                                                                      gATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACg                                             <  2:11784/140‑1 (MQ=255)

                                                                                        tataCCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCt                                           >  2:585649/1‑140 (MQ=255)

                                                                                          taCCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGTCAGGTAGCAGAGACGCTGt                                         >  1:1331487/1‑140 (MQ=255)

                                                                                           aCCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGtt                                        <  2:1188333/140‑1 (MQ=255)

                                                                                               ttATACCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTgaga                                    >  2:511464/1‑140 (MQ=255)

                                                                                                tataCCTGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGAt                                   >  1:970023/1‑140 (MQ=255)

                                                                                                      tGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGAtt                             >  1:663647/1‑140 (MQ=255)

                                                                                                      tGTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGAtt                             >  1:173980/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGAt                                   <  1:417023/133‑1 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGAt                                   >  2:417023/1‑133 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  2:1580219/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  2:1662416/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  1:71575/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  2:1373573/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  2:768652/1‑140 (MQ=255)

                                                                                                       gTTATACCAGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  2:1255289/1‑140 (MQ=255)

                                                                                                               aGATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCAc                    >  2:450408/1‑140 (MQ=255)

                                                                                                                gATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACg                   >  2:1172211/1‑140 (MQ=255)

                                                                                                                gATCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACg                   >  1:296668/1‑140 (MQ=255)

                                                                                                                gATCAATTAAGCAACACCCCACACAGAAAGCTTATAAGGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCGAGGTAGCGGAGACGCTGTTGAGATGCGATTGCAAGGCACg                   >  2:1511915/1‑140 (MQ=255)

                                                                                                                 aTCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCa                     >  2:1450939/1‑137 (MQ=255)

                                                                                                                 aTCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCa                     <  1:1450939/137‑1 (MQ=255)

                                                                                                                 aTCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGa                  >  1:830025/1‑140 (MQ=255)

                                                                                                                 aTCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGa                  >  1:791805/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            >  1:211215/1‑129 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTg                            <  2:211215/129‑1 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  1:1470828/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  2:1346980/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  1:266354/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  2:900294/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  1:929093/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  1:357247/1‑140 (MQ=255)

                                                                                                                  tCAATTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGAt                 >  2:612049/1‑140 (MQ=255)

                                                                                                                     aTTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCgg              >  1:250238/1‑140 (MQ=255)

                                                                                                                     aTTAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCgg              >  1:1254483/1‑140 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  1:450408/140‑1 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  2:866003/140‑1 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  2:1617261/140‑1 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  1:585649/140‑1 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             >  2:904254/1‑140 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  2:313213/140‑1 (MQ=255)

                                                                                                                      ttAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTAACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  1:101031/140‑1 (MQ=255)

                                                                                                                       tAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCt            <  2:296668/140‑1 (MQ=255)

                                                                                                                       tAAGCAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCt            <  1:1172211/140‑1 (MQ=255)

                                                                                                                           cAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  2:163696/135‑1 (MQ=255)

                                                                                                                           cAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGt        >  2:1636051/1‑140 (MQ=255)

                                                                                                                           cAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGt        >  1:203664/1‑140 (MQ=255)

                                                                                                                           cAACACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGt        >  2:64304/1‑140 (MQ=255)

                                                                                                                            aaCACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTc       <  2:791805/140‑1 (MQ=255)

                                                                                                                            aaCACCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTc       <  1:1636051/140‑1 (MQ=255)

                                                                                                                              cacCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             >  2:482486/1‑132 (MQ=255)

                                                                                                                              cacCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGc             <  1:482486/132‑1 (MQ=255)

                                                                                                                              cacCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAg     >  1:1260046/1‑140 (MQ=255)

                                                                                                                              cacCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAg     >  1:38365/1‑140 (MQ=255)

                                                                                                                              cacCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAg     >  1:1388456/1‑140 (MQ=255)

                                                                                                                               acCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAgg    >  1:1310842/1‑140 (MQ=255)

                                                                                                                               acCCCACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAgg    >  1:379246/1‑140 (MQ=255)

                                                                                                                                ccccACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAGGa   >  2:1151232/1‑140 (MQ=255)

                                                                                                                                 cccACACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAGGAt  <  1:612049/140‑1 (MQ=255)

TGGTCAAAAGGAGTCAGGAGTGCAGCCATTACGCCACGTAAATTCGTTGCCATAAATACCTCTGAAGTGATGCTTGTCTGATAAACGATATACCTTTATACCTGTTATACCAGATCAATTAAGCAACACCCCATACAGAAAGCTTATAATGCGATCTGCTTCACTAAAGTGGCATTATTTCTTTTTGTTGGTGGTCTGACCGAAAGCGTGCCAGGTAGCAGAGACGCTGTTGAGATGCGATTGCAACGCACGATCGGCTTCGTCAGGAT  >  NC_000913/3373524‑3373792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A