Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,420,850	A→G	L239L (CTA→CTG)	yhdX →	putative ABC transporter membrane subunit YhdX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,420,850	0	A	G	100.0%	369.7 / NA	98	L239L (CTA→CTG)	yhdX	putative ABC transporter membrane subunit YhdX
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (58/40); total (58/40)

Only 100 of 101 total aligned reads displayed.

TCCTTTCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCT  >  NC_000913/3420714‑3420979

tCCTTTCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTgcac                                                                                                                                >  2:890863/1‑140 (MQ=255)

tCCTTTCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTgcac                                                                                                                                >  2:1231397/1‑140 (MQ=255)

    ttCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTggg                                                                                                                            <  2:411622/140‑1 (MQ=255)

     tCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGa                                                                                                                           <  2:584090/140‑1 (MQ=255)

     tCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGa                                                                                                                           >  2:1635587/1‑140 (MQ=255)

         ttGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       <  2:172567/140‑1 (MQ=255)

         ttGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       >  1:1644622/1‑140 (MQ=255)

         ttGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       <  1:200376/140‑1 (MQ=255)

         ttGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       <  2:851494/140‑1 (MQ=255)

          tGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       <  2:784550/139‑1 (MQ=255)

          tGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTc                                                                                                                       >  1:784550/1‑139 (MQ=255)

           gggCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTccc                                                                                                                     <  1:890863/140‑1 (MQ=255)

            ggCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTggg                                                                                                                            <  2:45584/132‑1 (MQ=255)

            ggCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTggg                                                                                                                            >  1:45584/1‑132 (MQ=255)

                 ttCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCt                                                                                                               >  2:1333780/1‑140 (MQ=255)

                    cGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACg                                                                                                            <  2:474745/140‑1 (MQ=255)

                      cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAg                                                                                                                   >  1:961158/1‑131 (MQ=255)

                      cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAg                                                                                                                   <  2:961158/131‑1 (MQ=255)

                      cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAg                                                                                                          >  1:888918/1‑140 (MQ=255)

                      cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAg                                                                                                          <  1:504083/140‑1 (MQ=255)

                      cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAg                                                                                                          >  2:1653861/1‑140 (MQ=255)

                           ataaAACATACCAGATAAAGACCGGACAACTGTGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCttt                                                                                                     >  1:1656958/1‑140 (MQ=255)

                           ataaAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCttt                                                                                                     >  2:1604387/1‑140 (MQ=255)

                                 cATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTc                                                                                               <  1:1231397/140‑1 (MQ=255)

                                     ccAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCcgcg                                                                                           >  1:713277/1‑140 (MQ=255)

                                      cAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCgcgg                                                                                          >  1:813193/1‑140 (MQ=255)

                                        gATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCgcggcg                                                                                        >  1:177539/1‑140 (MQ=255)

                                         aTAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGcggcgg                                                                                       >  1:1144431/1‑140 (MQ=255)

                                           aaaGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGa                                                                                     <  2:888918/140‑1 (MQ=255)

                                                   gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                             >  2:846002/1‑140 (MQ=255)

                                                   gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                             >  2:482729/1‑140 (MQ=255)

                                                   gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                             >  1:1367619/1‑140 (MQ=255)

                                                         tGCGCCGTACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCCCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGATTTAATTCCt                                                                       >  2:764247/1‑140 (MQ=255)

                                                          gcgcCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTg                                                                      >  2:1405733/1‑140 (MQ=255)

                                                          gcgcCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTg                                                                      >  2:1603668/1‑140 (MQ=255)

                                                           cgccgcACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATg                                                                                   >  1:1408311/1‑126 (MQ=255)

                                                           cgccgcACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATg                                                                                   <  2:1408311/126‑1 (MQ=255)

                                                           cgccgcACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGa                                                                     >  2:624738/1‑140 (MQ=255)

                                                              cgcACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACt                                                                  >  1:495077/1‑140 (MQ=255)

                                                                cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                <  1:1244494/140‑1 (MQ=255)

                                                                cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                <  1:1635587/140‑1 (MQ=255)

                                                                cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                <  1:1604387/140‑1 (MQ=255)

                                                                cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                >  2:955902/1‑140 (MQ=255)

                                                                 aCCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGc                                                               <  1:1607684/140‑1 (MQ=255)

                                                                 aCCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGc                                                               <  1:1393210/140‑1 (MQ=255)

                                                                     ggCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGGTTTAATTCCTGAACTGgccgcc                                                           >  2:267310/1‑140 (MQ=255)

                                                                          aTCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAAc                                                      >  2:511031/1‑140 (MQ=255)

                                                                          aTCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAAc                                                      >  1:65890/1‑140 (MQ=255)

                                                                              ccgcAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTg                                                  <  1:1333780/140‑1 (MQ=255)

                                                                               cgcAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTgg                                                 <  1:955902/140‑1 (MQ=255)

                                                                                    tgtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                            <  2:595009/140‑1 (MQ=255)

                                                                                     gtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                           <  2:495077/140‑1 (MQ=255)

                                                                                     gtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                           <  1:1310823/140‑1 (MQ=255)

                                                                                      ttGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                           <  2:1551705/139‑1 (MQ=255)

                                                                                      ttGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                           >  1:1551705/1‑139 (MQ=255)

                                                                                      ttGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTc                                          >  2:275399/1‑140 (MQ=255)

                                                                                       tGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCg                                         <  2:1092592/140‑1 (MQ=255)

                                                                                            aTTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTta                                    <  1:275399/140‑1 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCg                                         >  2:1580198/1‑133 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCg                                         <  1:1580198/133‑1 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  2:395728/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:125186/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:845869/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:1404002/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:603713/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  2:754535/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:31804/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  1:1259163/1‑140 (MQ=255)

                                                                                              tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGGTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                  >  2:745714/1‑140 (MQ=255)

                                                                                                gTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                            >  2:146821/1‑128 (MQ=255)

                                                                                                gTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                            <  1:146821/128‑1 (MQ=255)

                                                                                                gTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACa                                >  2:1704615/1‑140 (MQ=255)

                                                                                                   tGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCt                             >  2:1353648/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGGTGGGTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  2:328378/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                            >  1:992060/1‑123 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  1:1586795/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  2:1094636/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  1:1124734/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  1:473714/1‑140 (MQ=255)

                                                                                                     ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                           >  1:587093/1‑140 (MQ=255)

                                                                                                      cTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCa                          >  2:817223/1‑140 (MQ=255)

                                                                                                          aCTGGCGCAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGGTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTa                      >  1:152462/1‑140 (MQ=255)

                                                                                                              gcgcAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGc                  <  1:624738/140‑1 (MQ=255)

                                                                                                               cgcAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGcc                 >  1:1034215/1‑140 (MQ=255)

                                                                                                               cgcAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGcc                 >  1:1041581/1‑140 (MQ=255)

                                                                                                               cgcAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGcc                 >  1:1014920/1‑140 (MQ=255)

                                                                                                               cgcAATGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGcc                 >  2:1295887/1‑140 (MQ=255)

                                                                                                                  aaTGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCgag              <  1:846002/140‑1 (MQ=255)

                                                                                                                   aTGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCgaga             >  2:721814/1‑140 (MQ=255)

                                                                                                                    tGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGAt            >  2:838325/1‑140 (MQ=255)

                                                                                                                    tGGCTTTTTGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGAt            >  2:1094038/1‑140 (MQ=255)

                                                                                                                            tGGCGCAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCcgcg    <  1:482729/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  1:721814/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  1:395728/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  2:813193/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  1:1653861/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  2:473714/140‑1 (MQ=255)

                                                                                                                              gcgcAGCACTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  2:1586795/140‑1 (MQ=255)

                                                                                                                                gcagcaCTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  <  1:1186356/138‑1 (MQ=255)

                                                                                                                                gcagcaCTGCACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt  >  2:1186356/1‑138 (MQ=255)

TCCTTTCTGTTGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCT  >  NC_000913/3420714‑3420979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A