Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
183 |
98.6 |
3427438 |
96.9% |
3321187 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,461,922 |
T→C |
V152A (GTC→GCC) |
gspH → |
Type II secretion system protein GspH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,461,922 | 0 | T | C | 100.0%
| 340.0
/ NA
| 93 | V152A (GTC→GCC) | gspH | Type II secretion system protein GspH |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/52); total (41/52) |
CTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGTCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGC > NC_000913/3461786‑3462057
|
ctctCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTg > 2:894218/1‑140 (MQ=255)
tctcAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGt > 2:784996/1‑140 (MQ=255)
tCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCAt < 1:1452540/140‑1 (MQ=255)
tCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCAt < 1:228567/140‑1 (MQ=255)
tCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCCCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCAt < 1:1518999/140‑1 (MQ=255)
cTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATg < 2:1137759/140‑1 (MQ=255)
ttCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATgg > 1:291323/1‑140 (MQ=255)
aGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGccc < 2:1404366/140‑1 (MQ=255)
gCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCAt > 2:1531252/1‑134 (MQ=255)
gCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCAt < 1:1531252/134‑1 (MQ=255)
gCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACG‑CGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATg < 2:299947/134‑1 (MQ=255)
gCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACG‑CGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATg > 1:299947/1‑134 (MQ=255)
ccATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCt < 2:19125/140‑1 (MQ=255)
cATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTg < 2:379198/140‑1 (MQ=255)
ttAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGAt > 1:1192799/1‑140 (MQ=255)
cTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACg < 2:291323/140‑1 (MQ=255)
tgatgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGc < 2:183502/140‑1 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 1:570923/1‑140 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 2:1401505/1‑140 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc < 1:914936/140‑1 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 2:914936/1‑140 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 1:1688474/1‑140 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 2:257847/1‑140 (MQ=255)
atgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTc > 1:1542581/1‑140 (MQ=255)
tgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCg < 1:902054/140‑1 (MQ=255)
tgaCAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCg < 1:1371446/140‑1 (MQ=255)
aGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCag > 2:19662/1‑140 (MQ=255)
gCAACCAGCCACAGGTTGTGATTCTGGCCGACGGAAAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCCCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCaga < 2:404714/140‑1 (MQ=255)
acaGGTTGTGATTCTGGCCGACGGACCAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGcc < 2:1192799/140‑1 (MQ=255)
acaGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGcc < 2:333166/140‑1 (MQ=255)
aGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCa > 1:450226/1‑140 (MQ=255)
tgtgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaa < 2:1347223/140‑1 (MQ=255)
tgtgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaa < 1:257847/140‑1 (MQ=255)
gtgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaac < 1:784996/140‑1 (MQ=255)
tgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATAcc < 1:1482773/128‑1 (MQ=255)
tgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATAcc > 2:1482773/1‑128 (MQ=255)
tgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaaca > 2:1313924/1‑140 (MQ=255)
tgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaaca > 1:1079652/1‑140 (MQ=255)
tgATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaaca > 1:238487/1‑140 (MQ=255)
gATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGaacaa < 1:1401505/140‑1 (MQ=255)
tGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAAt > 1:1511190/1‑140 (MQ=255)
gCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCa > 1:1344484/1‑140 (MQ=255)
cGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGAt > 2:1584769/1‑140 (MQ=255)
cGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGAt < 2:904532/140‑1 (MQ=255)
aCAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGac < 1:988473/140‑1 (MQ=255)
cAAATCACGCTCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGaca < 2:1053151/140‑1 (MQ=255)
aaTCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGaca < 2:691835/138‑1 (MQ=255)
aaTCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGaca > 1:691835/1‑138 (MQ=255)
cACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCt < 2:449477/140‑1 (MQ=255)
cACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCt < 2:570923/140‑1 (MQ=255)
cGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCAGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTg < 2:1579008/140‑1 (MQ=255)
cccTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGGTACCCGCCCATGAACAAACAATCAGGTATGACACTGCTTGaa > 2:1585903/1‑140 (MQ=255)
cccTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGaa > 2:638668/1‑140 (MQ=255)
cTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGt < 1:1523093/140‑1 (MQ=255)
cTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGACCATGAACAAACAATCAGGGATGACACTGCTTGAAGt < 2:1511190/140‑1 (MQ=255)
cTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGACCAAACGCTCGCCAGAGATTCCCGCCCATGATCAAACAATCAGGGATGACACTGCTTGAAGt < 2:1527115/140‑1 (MQ=255)
ctctTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCtt > 1:413083/1‑140 (MQ=255)
ctctTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCtt > 2:392881/1‑140 (MQ=255)
tctTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTa < 2:238487/140‑1 (MQ=255)
tttGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCtt > 2:1075040/1‑129 (MQ=255)
tttGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCtt < 1:1075040/129‑1 (MQ=255)
tgATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGa < 2:1688474/140‑1 (MQ=255)
tgATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGa > 1:926446/1‑140 (MQ=255)
aTGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATg < 2:558082/140‑1 (MQ=255)
aTGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATg > 2:576959/1‑140 (MQ=255)
tGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGa > 2:657541/1‑140 (MQ=255)
ggCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAg > 1:1523472/1‑140 (MQ=255)
ggCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAg > 1:1689955/1‑140 (MQ=255)
ggCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAg > 1:840908/1‑140 (MQ=255)
gCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATCCCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGt < 1:675089/140‑1 (MQ=255)
gCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGt > 1:644083/1‑140 (MQ=255)
aaCGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTAtt < 1:1410539/140‑1 (MQ=255)
aCGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTAttt > 1:736621/1‑140 (MQ=255)
aCGCCGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTAttt > 1:1571919/1‑140 (MQ=255)
cGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCAc < 2:1079652/140‑1 (MQ=255)
cGGGACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCAc < 2:644083/140‑1 (MQ=255)
ggACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGc > 2:873343/1‑123 (MQ=255)
ggACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGc < 1:873343/123‑1 (MQ=255)
ggACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCg > 2:1298126/1‑140 (MQ=255)
gACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGa > 1:1352326/1‑124 (MQ=255)
gACCGGTGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGa < 2:1352326/124‑1 (MQ=255)
tGAGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGc < 2:1702432/140‑1 (MQ=255)
aGCCGCTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGctc < 2:1344484/140‑1 (MQ=255)
cTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACt < 1:894218/140‑1 (MQ=255)
cTCCTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACt < 1:256819/140‑1 (MQ=255)
cTGACGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTa > 2:255948/1‑140 (MQ=255)
aCGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATg < 1:19662/140‑1 (MQ=255)
aCGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATg < 1:1584769/140‑1 (MQ=255)
aCGTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATg > 2:1288415/1‑140 (MQ=255)
gTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAg < 2:48956/140‑1 (MQ=255)
gTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAg < 2:840908/140‑1 (MQ=255)
gTTAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAg < 2:1523472/140‑1 (MQ=255)
ttAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGc < 1:994642/140‑1 (MQ=255)
ttAGCCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGc < 2:926446/140‑1 (MQ=255)
|
CTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGACGGACAAATCACGCCCTTCTCTTTGTTGATGGCTAACGCCGGGACCGGTGAGCCGCTCCTGACGTTAGTCTGTTCAGGCTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGC > NC_000913/3461786‑3462057
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
