Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,513,370 T→C Q90R (CAG→CGG)  trpS ← tryptophan‑‑tRNA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,513,3700TC100.0% 472.4 / NA 125Q90R (CAG→CGG) trpStryptophan‑‑tRNA ligase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (69/56);  total (69/56)

Only 100 of 126 total aligned reads displayed.

TCCGCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACTGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATCGCGTG  >  NC_000913/3513235‑3513506
                                                                                                                                       |                                                                                                                                        
tCCGCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGc                                                                                                                                      <  2:343406/140‑1 (MQ=255)
 ccGCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGTAGTTCAGTGCCCAGCCTAACCGTGCa                                                                                                                                     <  2:340258/140‑1 (MQ=255)
 ccGCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCa                                                                                                                                     <  1:757586/140‑1 (MQ=255)
   gCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATg                                                                                                                                   >  2:1184272/1‑140 (MQ=255)
   gCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATg                                                                                                                                   >  2:181961/1‑140 (MQ=255)
      gCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTc                                                                                                                                >  1:994097/1‑140 (MQ=255)
      gCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTc                                                                                                                                >  1:979058/1‑140 (MQ=255)
        cATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCg                                                                                                                              <  2:651033/140‑1 (MQ=255)
        cATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCg                                                                                                                              <  2:1121323/140‑1 (MQ=255)
          tCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGc                                                                                                                                      <  1:230778/130‑1 (MQ=255)
          tCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGc                                                                                                                            >  1:187194/1‑140 (MQ=255)
              cACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGt                                                                                                                        >  1:960187/1‑140 (MQ=255)
              cACCGGATAGTCAAACAGACCAGCGATGATGTTCTCTGCATAACGCGCAGCTTTATCTTTAAACTGCGTCATGCGCCTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGCTCCGGCACGt                                                                                                                        >  1:843615/1‑140 (MQ=255)
                 cGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTggg                                                                                                                     >  2:1626805/1‑140 (MQ=255)
                 cGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTggg                                                                                                                     >  1:1558929/1‑140 (MQ=255)
                 cGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTggg                                                                                                                     >  1:151962/1‑140 (MQ=255)
                  ggATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGa                                                                                                                    <  2:843615/140‑1 (MQ=255)
                  ggATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGa                                                                                                                    <  2:1423666/140‑1 (MQ=255)
                  ggATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGa                                                                                                                    <  1:1184272/140‑1 (MQ=255)
                  ggATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGa                                                                                                                    <  2:979058/140‑1 (MQ=255)
                  ggATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGa                                                                                                                    <  2:692931/140‑1 (MQ=255)
                   gATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGAc                                                                                                                   >  2:132410/1‑140 (MQ=255)
                    aTAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACt                                                                                                                  >  1:1488486/1‑140 (MQ=255)
                        tCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAAc                                                                                                              >  2:871922/1‑140 (MQ=255)
                             cAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACaaaaa                                                                                                         <  2:314112/140‑1 (MQ=255)
                             cAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACaaaaa                                                                                                         >  1:768702/1‑140 (MQ=255)
                             cAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACaaaaa                                                                                                         <  1:132410/140‑1 (MQ=255)
                             cAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACaaaaa                                                                                                         >  1:6113/1‑140 (MQ=255)
                                  cAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTg                                                                                                    >  1:1518801/1‑140 (MQ=255)
                                  cAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTg                                                                                                    >  1:1282379/1‑140 (MQ=255)
                                    gCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCt                                                                                                  <  2:1626641/140‑1 (MQ=255)
                                    gCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCt                                                                                                  <  1:796753/140‑1 (MQ=255)
                                    gCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCt                                                                                                  <  1:856275/140‑1 (MQ=255)
                                    gCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCt                                                                                                  <  1:1409860/140‑1 (MQ=255)
                                          aTGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGCTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTtctc                                                                                            <  2:1488486/140‑1 (MQ=255)
                                             ttCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAgg                                                                                         <  1:1278329/140‑1 (MQ=255)
                                             ttCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAgg                                                                                         <  1:1447100/140‑1 (MQ=255)
                                               ctcGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGAt                                                                                       <  2:1474124/140‑1 (MQ=255)
                                               ctcGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGAt                                                                                       >  2:899957/1‑140 (MQ=255)
                                                 cGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCg                                                                                     <  2:151962/140‑1 (MQ=255)
                                                  ggCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGa                                                                                    <  1:871922/140‑1 (MQ=255)
                                                  ggCATAACGCGCAGAATTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGa                                                                                    >  1:1506757/1‑140 (MQ=255)
                                                       aaCGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACca                                                                               >  1:468961/1‑140 (MQ=255)
                                                       aaCGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACca                                                                               <  1:124546/140‑1 (MQ=255)
                                                         cgcgCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTtctc                                                                                            >  2:1288071/1‑125 (MQ=255)
                                                         cgcgCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACcaca                                                                             >  2:10987/1‑140 (MQ=255)
                                                         cgcgCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACcaca                                                                             >  1:100941/1‑140 (MQ=255)
                                                              aGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCa                                                                        <  1:857929/140‑1 (MQ=255)
                                                                aTTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGa                                                                      >  2:249418/1‑140 (MQ=255)
                                                                   tATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATAc                                                                   <  2:587954/140‑1 (MQ=255)
                                                                       tttAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAgg                                                               <  2:984750/140‑1 (MQ=255)
                                                                       tttAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAgg                                                               <  1:181961/140‑1 (MQ=255)
                                                                        ttAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGc                                                              <  1:249418/140‑1 (MQ=255)
                                                                        ttAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGc                                                              <  2:1282379/140‑1 (MQ=255)
                                                                          aaaCTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGcc                                                                         >  2:1261909/1‑127 (MQ=255)
                                                                          aaaCTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGcc                                                                         <  1:1261909/127‑1 (MQ=255)
                                                                           aaCTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAg                                                           <  1:10987/140‑1 (MQ=255)
                                                                            aCTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGc                                                          <  1:243446/140‑1 (MQ=255)
                                                                             cTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCg                                                         >  2:1254357/1‑140 (MQ=255)
                                                                               gCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCa                                                                        <  2:1540221/123‑1 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAgg                                                               <  1:1127982/131‑1 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  2:1069939/1‑140 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  1:1654643/1‑140 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  2:453821/1‑140 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  2:1473272/1‑140 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  1:55395/1‑140 (MQ=255)
                                                                                cGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTAt                                                      >  2:642007/1‑140 (MQ=255)
                                                                                     tGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGc                                                 >  1:1622540/1‑140 (MQ=255)
                                                                                     tGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGc                                                 >  2:1547102/1‑140 (MQ=255)
                                                                                     tGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGc                                                 >  2:704257/1‑140 (MQ=255)
                                                                                     tGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGc                                                 >  2:1657097/1‑140 (MQ=255)
                                                                                             aGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCttt                                         >  2:712542/1‑140 (MQ=255)
                                                                                               ttCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTAc                                       >  1:1044540/1‑140 (MQ=255)
                                                                                                    cGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGc                                  <  1:712542/140‑1 (MQ=255)
                                                                                                    cGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGc                                  <  2:726014/140‑1 (MQ=255)
                                                                                                    cGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGc                                  >  2:466196/1‑140 (MQ=255)
                                                                                                         tAGGTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCtg                             >  2:353749/1‑140 (MQ=255)
                                                                                                           ggTATAGCAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTTTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCtgtg                           <  2:19818/140‑1 (MQ=255)
                                                                                                                  cAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTg                    >  2:1676847/1‑140 (MQ=255)
                                                                                                                  cAGTTCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTg                    >  1:662991/1‑140 (MQ=255)
                                                                                                                     ttCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGgcg                 >  1:1210396/1‑140 (MQ=255)
                                                                                                                     ttCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGgcg                 >  1:365979/1‑140 (MQ=255)
                                                                                                                      tCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGgcgc                >  1:959514/1‑140 (MQ=255)
                                                                                                                      tCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGgcgc                >  2:1263261/1‑140 (MQ=255)
                                                                                                                      tCAGTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGgcgc                >  2:171077/1‑140 (MQ=255)
                                                                                                                       cAGTGCCCAGCCTAACCGTGCCTGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCa               <  2:1558929/140‑1 (MQ=255)
                                                                                                                         gTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACg             <  2:6113/140‑1 (MQ=255)
                                                                                                                         gTGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACg             <  1:466196/140‑1 (MQ=255)
                                                                                                                          tGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACgg            >  1:1267454/1‑140 (MQ=255)
                                                                                                                          tGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACgg            >  1:1608170/1‑140 (MQ=255)
                                                                                                                          tGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACgg            <  2:829810/140‑1 (MQ=255)
                                                                                                                          tGCCCAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACgg            >  1:329038/1‑140 (MQ=255)
                                                                                                                            cccAGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTg          >  2:818822/1‑140 (MQ=255)
                                                                                                                               aGCCTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATc       >  2:1308214/1‑140 (MQ=255)
                                                                                                                                 ccTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATcgc     >  1:1470887/1‑140 (MQ=255)
                                                                                                                                 ccTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATcgc     >  1:1243532/1‑140 (MQ=255)
                                                                                                                                 ccTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATcgc     >  1:74300/1‑140 (MQ=255)
                                                                                                                                  cTAACCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATcgcg    <  2:662991/140‑1 (MQ=255)
                                                                                                                                    aaCCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATCGCgtg  <  1:682874/140‑1 (MQ=255)
                                                                                                                                    aaCCGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATCGCgtg  <  1:1547102/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TCCGCTGCCATCAGCACCGGATAGTCAAACAGACCAGCGTTGATGTTCTCGGCATAACGCGCAGATTTATCTTTAAACTGCGTCATGCGACTCAGTTCGCCGAAGTAGGTATAGCAGTTCAGTGCCCAGCCTAACTGTGCATGTTCCGGCACGTGGGACTGAACAAAAATGGTGCTTTTCTCAGGATCGATACCACAAGCCAGATACAAGGCCAGCGTATCCAGCGTCGCTTTACGCAGCTTCTGTGCATCCTGGCGCACGGTGATCGCGTG  >  NC_000913/3513235‑3513506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A