Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,750,580 G→A A165A (GCG→GCA)  sgbE → L‑ribulose‑5‑phosphate 4‑epimerase SgbE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,750,5800GA100.0% 434.7 / NA 123A165A (GCG→GCA) sgbEL‑ribulose‑5‑phosphate 4‑epimerase SgbE
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (66/57);  total (66/57)

Only 100 of 125 total aligned reads displayed.

GATTATTTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCGGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCAGCTCCCT  >  NC_000913/3750443‑3750709
                                                                                                                                         |                                                                                                                                 
gATTATTTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGt                                                                                                                                 >  2:71075/1‑140 (MQ=255)
 attattTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTg                                                                                                                                <  2:1618528/140‑1 (MQ=255)
   tattTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATTAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCt                                                                                                                              <  1:27990/140‑1 (MQ=255)
   tattTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCt                                                                                                                              >  1:1081791/1‑140 (MQ=255)
    attTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTg                                                                                                                             <  1:1428256/140‑1 (MQ=255)
         tACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCa                                                                                                                        <  2:1431888/140‑1 (MQ=255)
           cGGTGCCATACCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCAtt                                                                                                                      >  1:638076/1‑140 (MQ=255)
             gTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATtct                                                                                                                    >  1:1649201/1‑140 (MQ=255)
                  aTCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACgg                                                                                                               <  2:968357/140‑1 (MQ=255)
                  aTCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACgg                                                                                                               <  2:649958/140‑1 (MQ=255)
                   tCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGc                                                                                                              >  2:221871/1‑140 (MQ=255)
                        tGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGtt                                                                                                         >  1:76490/1‑140 (MQ=255)
                        tGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGtt                                                                                                         >  1:1707905/1‑140 (MQ=255)
                        tGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTACGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGtt                                                                                                         >  1:1536966/1‑140 (MQ=255)
                        tGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGAGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGtt                                                                                                         >  1:1031840/1‑140 (MQ=255)
                          cACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCg                                                                                                       >  2:1313760/1‑140 (MQ=255)
                           aCGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGc                                                                                                      <  2:8877/140‑1 (MQ=255)
                            cgcgACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCa                                                                                                     <  1:1686803/140‑1 (MQ=255)
                             gcgACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCAt                                                                                                    <  1:71075/140‑1 (MQ=255)
                             gcgACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCAt                                                                                                    <  2:577632/140‑1 (MQ=255)
                               gACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATgg                                                                                                  >  2:898505/1‑140 (MQ=255)
                                         cGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGCAAAAAcg                                                                                        >  2:318218/1‑140 (MQ=255)
                                           cAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCa                                                                                                     <  1:1455589/125‑1 (MQ=255)
                                           cAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCa                                                                                                     >  2:1455589/1‑125 (MQ=255)
                                             gaggagATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAAcgccgc                                                                                    <  1:840478/140‑1 (MQ=255)
                                              aggagATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACgccgcc                                                                                   >  2:368341/1‑140 (MQ=255)
                                              aggagATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACgccgcc                                                                                   >  2:953226/1‑140 (MQ=255)
                                                 agaTTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGT‑AAAACGCCGCCGATg                                                                               <  2:1031840/140‑1 (MQ=255)
                                                   aTTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGc                                                                              >  1:1286338/1‑140 (MQ=255)
                                                   aTTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCAGTTCGCATGGGGTAAAAACGCCGCCGATGc                                                                              >  2:1417419/1‑140 (MQ=255)
                                                    ttAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGcc                                                                             <  2:1707905/140‑1 (MQ=255)
                                                        cGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGc                                                                         >  1:1224735/1‑140 (MQ=255)
                                                         ggCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCa                                                                        <  2:1649201/140‑1 (MQ=255)
                                                          gCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGTCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCAt                                                                       >  1:1496503/1‑140 (MQ=255)
                                                          gCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATg                                                                               <  2:251202/132‑1 (MQ=255)
                                                          gCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCAt                                                                       >  1:818694/1‑140 (MQ=255)
                                                          gCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCAt                                                                       >  2:1251538/1‑140 (MQ=255)
                                                          gCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCAt                                                                       >  2:1706829/1‑140 (MQ=255)
                                                           cGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATa                                                                      <  2:1360603/140‑1 (MQ=255)
                                                            gaatatgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGcc                                                                             >  1:296650/1‑132 (MQ=255)
                                                            gaatatgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGcc                                                                             <  2:296650/132‑1 (MQ=255)
                                                            gaatatgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATaa                                                                     <  1:1706829/140‑1 (MQ=255)
                                                            gaatatgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATaa                                                                     <  1:498438/140‑1 (MQ=255)
                                                              atatgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGCAAAAACGCCGCCGATGCCGTGCATAACg                                                                   >  1:1183335/1‑140 (MQ=255)
                                                                 tgaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCg                                                                <  2:1389680/140‑1 (MQ=255)
                                                                  gaatatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTACGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCgt                                                               <  2:1536966/140‑1 (MQ=255)
                                                                    atatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCgtag                                                             <  2:159663/140‑1 (MQ=255)
                                                                     tatCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCgtagt                                                            >  1:617902/1‑140 (MQ=255)
                                                                      atCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCgtagta                                                           <  2:1224735/140‑1 (MQ=255)
                                                                       tCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTAc                                                          >  2:480250/1‑140 (MQ=255)
                                                                        cAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACt                                                         >  2:1230236/1‑140 (MQ=255)
                                                                         aGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTc                                                        >  2:1130679/1‑140 (MQ=255)
                                                                         aGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTc                                                        >  2:810828/1‑140 (MQ=255)
                                                                          gACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCg                                                       <  2:1286338/140‑1 (MQ=255)
                                                                          gACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCg                                                       >  1:1368070/1‑140 (MQ=255)
                                                                          gACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCg                                                       >  2:1691420/1‑140 (MQ=255)
                                                                          gACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCg                                                       >  2:1467630/1‑140 (MQ=255)
                                                                           aCCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCga                                                      >  2:567051/1‑140 (MQ=255)
                                                                             cGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCgaag                                                    >  2:125707/1‑140 (MQ=255)
                                                                             cGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCgaag                                                    >  2:837628/1‑140 (MQ=255)
                                                                              ggCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACg                                                                   >  2:655250/1‑124 (MQ=255)
                                                                              ggCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACg                                                                   <  1:655250/124‑1 (MQ=255)
                                                                               gCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCgaagaa                                                  <  1:866167/140‑1 (MQ=255)
                                                                               gCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCgaagaa                                                  <  2:1533647/140‑1 (MQ=255)
                                                                               gCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCgaagaa                                                  >  1:1191657/1‑140 (MQ=255)
                                                                                cGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAAt                                                 >  1:299987/1‑140 (MQ=255)
                                                                                 gAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATg                                                <  1:837628/140‑1 (MQ=255)
                                                                                  aaGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAGGAATgc                                               <  1:1130679/140‑1 (MQ=255)
                                                                                  aaGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgc                                               <  1:924878/140‑1 (MQ=255)
                                                                                  aaGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgc                                               <  1:461895/140‑1 (MQ=255)
                                                                                   aGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgcg                                              <  2:617902/140‑1 (MQ=255)
                                                                                    gTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgcgc                                             <  2:1528269/140‑1 (MQ=255)
                                                                                    gTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgc                                               >  2:693798/1‑138 (MQ=255)
                                                                                     tGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGcc                                            >  1:1265603/1‑140 (MQ=255)
                                                                                         cATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgcgc                                             <  1:1489052/135‑1 (MQ=255)
                                                                                         cATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCtata                                        >  2:1687151/1‑140 (MQ=255)
                                                                                         cATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCtata                                        <  2:299987/140‑1 (MQ=255)
                                                                                         cATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCtata                                        <  1:482116/140‑1 (MQ=255)
                                                                                         cATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCtata                                        <  2:1368070/140‑1 (MQ=255)
                                                                                            tGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATgg                                     >  2:283256/1‑140 (MQ=255)
                                                                                              aaaCCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTatat                                       <  1:29730/136‑1 (MQ=255)
                                                                                               aaCCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATgcgc                                             <  1:1546736/129‑1 (MQ=255)
                                                                                               aaCCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTc                                  >  1:1097089/1‑140 (MQ=255)
                                                                                                 ccTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTa                                >  2:384744/1‑140 (MQ=255)
                                                                                                  cTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTAt                               >  2:1520104/1‑140 (MQ=255)
                                                                                                   ttCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTAtt                              >  1:808165/1‑140 (MQ=255)
                                                                                                    tCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATtc                             >  2:819356/1‑140 (MQ=255)
                                                                                                    tCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATtc                             >  2:1003819/1‑140 (MQ=255)
                                                                                                    tCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATtc                             >  1:557853/1‑140 (MQ=255)
                                                                                                     cGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATtct                            >  1:741228/1‑140 (MQ=255)
                                                                                                            cGTGGCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCa                     >  1:164431/1‑140 (MQ=255)
                                                                                                               ggCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCt                  <  1:1034168/140‑1 (MQ=255)
                                                                                                               ggCAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCt                  >  2:1622634/1‑140 (MQ=255)
                                                                                                                 cAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTg                <  1:1251538/140‑1 (MQ=255)
                                                                                                                 cAGGAGTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGAGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTg                <  2:1183335/140‑1 (MQ=255)
                                                                                                                      gTCCGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTg                <  1:1711297/135‑1 (MQ=255)
                                                                                                                        ccGGCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCa         <  2:76490/140‑1 (MQ=255)
                                                                                                                           gCACAAATCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCAGCt      >  1:760261/1‑140 (MQ=255)
                                                                                                                           gCACAAATCCCGACAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCAGCt      >  2:1238381/1‑140 (MQ=255)
                                                                                                                               aaaTCCCGGCAGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCAGCTCCCt  >  1:458744/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                 
GATTATTTTTACGGTGCCATCCCCTGCACGCGACAGATGACCGCAGAGGAGATTAACGGCGAATATGAATATCAGACCGGCGAAGTGATCATTGAAACCTTCGAAGAACGTGGCAGGAGTCCGGCACAAATCCCGGCGGTGCTGGTGCATTCTCACGGCCCGTTCGCATGGGGTAAAAACGCCGCCGATGCCGTGCATAACGCCGTAGTACTCGAAGAATGCGCCTATATGGGTCTATTCTCGCGCCAGCTTGCGCCGCAGCTCCCT  >  NC_000913/3750443‑3750709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A