Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,846,817 G→A G117G (GGC→GGT)  uhpT ← hexose‑6‑phosphate:phosphate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,846,8170GA100.0% 221.0 / NA 63G117G (GGC→GGT) uhpThexose‑6‑phosphate:phosphate antiporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (38/25);  total (38/25)

ACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAACC  >  NC_000913/3846682‑3846951
                                                                                                                                       |                                                                                                                                      
aCCGAGAATTGCCCGGCTTTTACGCCGGGGCTCCTTTTTGGGGGTGGGGGAGTAACTGAAGGACCCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCa                                                                                                                                    <  2:244706/140‑1 (MQ=255)
  cGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATa                                                                                                                                  >  2:1317977/1‑140 (MQ=255)
    aGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACt                                                                                                                                >  1:400213/1‑140 (MQ=255)
           tCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTgctgtct                                                                                                                         >  1:832200/1‑134 (MQ=255)
                         gggggcgTCCTTTTGGTGATGGTGGAGAAACTGCACAACCCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACa                                                                                                           <  1:542534/137‑1 (MQ=255)
                          gcggcgTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACaa                                                                                                          >  1:1705992/1‑140 (MQ=255)
                            ggcgTCCTTTTGGTGATGGTGAAATAACTCCACAAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAAt                                                                                                        <  2:1122095/140‑1 (MQ=255)
                             gcgTCTTTTTGGTGGTGGGGGAGAACCTGCCCAAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATa                                                                                                       <  2:484918/140‑1 (MQ=255)
                               gtctttttGGGGAGGGGGGAGTAACTGCACAACCCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGc                                                                                                     <  2:176835/135‑1 (MQ=255)
                                tCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCa                                                                                                    >  2:635197/1‑140 (MQ=255)
                                               gggAGTAACCGAACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATg                                                                                     <  2:143900/139‑1 (MQ=255)
                                                  aGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAAc                                                                                  >  2:663659/1‑140 (MQ=255)
                                                    tAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCATAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACgg                                                                                <  1:1173403/140‑1 (MQ=255)
                                                    aaccTGCACGACCCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACgg                                                                                <  1:768530/137‑1 (MQ=255)
                                                      aCTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCa                                                                              >  1:1228375/1‑140 (MQ=255)
                                                      aCTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCa                                                                              >  1:389858/1‑140 (MQ=255)
                                                         gCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGa                                                                           >  1:425539/1‑140 (MQ=255)
                                                         gCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGa                                                                           >  1:1151795/1‑140 (MQ=255)
                                                            cGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAAtt                                                                        >  2:316020/1‑140 (MQ=255)
                                                                    cgGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGgtg                                                                >  1:1165638/1‑140 (MQ=255)
                                                                         ctctGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGttttt                                                           >  1:1133271/1‑140 (MQ=255)
                                                                           ctGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGTAGGAATTGTTTGGTGTTTTTGc                                                         >  1:400219/1‑140 (MQ=255)
                                                                           ctGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc                                                         >  2:388645/1‑140 (MQ=255)
                                                                           ctGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc                                                         >  1:1524699/1‑140 (MQ=255)
                                                                              gAAAAGGCCGATAAAGGGGTAGAGGACAATCATCAGGACAAGGCTACCCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGTAGGAATTGTTTGGTGTTTTTGCCGt                                                      <  2:400219/140‑1 (MQ=255)
                                                                              gAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt                                                      >  1:1057503/1‑140 (MQ=255)
                                                                              gAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt                                                      <  1:663659/140‑1 (MQ=255)
                                                                                  aaGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGc                                                  <  1:182053/140‑1 (MQ=255)
                                                                                   aGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCg                                                 >  1:311900/1‑140 (MQ=255)
                                                                                    gCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgt                                                <  2:425539/140‑1 (MQ=255)
                                                                                    gCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgt                                                >  2:111642/1‑140 (MQ=255)
                                                                                      cGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtag                                              >  1:1397976/1‑140 (MQ=255)
                                                                                      cGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtag                                              >  1:584478/1‑140 (MQ=255)
                                                                                               cGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAAcc                                     <  2:1294749/140‑1 (MQ=255)
                                                                                                gTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCa                                    <  1:711184/140‑1 (MQ=255)
                                                                                                gTAGAAGGCAATCACCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCa                                    <  2:191094/140‑1 (MQ=255)
                                                                                                   gAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCg                                 >  1:911734/1‑140 (MQ=255)
                                                                                                     aGGCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGtt                               <  2:1133271/140‑1 (MQ=255)
                                                                                                      ggCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGtagtag                                           >  1:1683832/1‑127 (MQ=255)
                                                                                                      ggCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGtagtag                                           <  2:1683832/127‑1 (MQ=255)
                                                                                                      ggCAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGttt                              <  1:1317977/140‑1 (MQ=255)
                                                                                                        cAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTa                            >  2:540800/1‑140 (MQ=255)
                                                                                                        cAATCATCAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTa                            >  2:1168153/1‑140 (MQ=255)
                                                                                                          atcatcAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTAcc                          <  2:1524699/140‑1 (MQ=255)
                                                                                                          atcatcAGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTAcc                          <  2:311900/140‑1 (MQ=255)
                                                                                                           tcatcaGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTAccc                         <  2:911734/140‑1 (MQ=255)
                                                                                                               caGGAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGc                     <  1:1707315/140‑1 (MQ=255)
                                                                                                                  gAACAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCAt                  >  2:88792/1‑140 (MQ=255)
                                                                                                                     cAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAg               >  1:91448/1‑140 (MQ=255)
                                                                                                                     cAGGCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAg               >  1:1552323/1‑140 (MQ=255)
                                                                                                                       ggCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTg             >  1:1693356/1‑140 (MQ=255)
                                                                                                                       ggCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTg             <  2:1165638/140‑1 (MQ=255)
                                                                                                                        gCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGa            >  2:1021124/1‑140 (MQ=255)
                                                                                                                        gCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGa            >  2:281064/1‑140 (MQ=255)
                                                                                                                        gCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGa            >  2:15511/1‑140 (MQ=255)
                                                                                                                        gCTAACCGAGCCGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGa            <  2:389858/140‑1 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCAt                  <  1:610672/124‑1 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCAt                  >  2:610672/1‑124 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  >  2:1333034/1‑140 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  >  2:190899/1‑140 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  >  1:1326721/1‑140 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  >  2:278660/1‑140 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  <  1:278660/140‑1 (MQ=255)
                                                                                                                                  ccGCTACCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAAcc  >  2:1631025/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
ACCGAGGAATGTCCCGCGTTTACGACGCGGCGTCCATTTGGTGATGGTGGAGTAACTGCACGAACCGCCGGTACTCTGGAAAAAGCCGCTTAAGGCGTAGAAGGCAATCATCAGGAACAGGCTAACCGAGCCGCTGCCCATACTGGCACTGAAGCCCAGCATACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAAACCAGCGTTTTACCCACGCCATAAGTGATGGAGAAACC  >  NC_000913/3846682‑3846951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A