Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,180,135 A→G E47G (GAA→GGA)  rplJ → 50S ribosomal subunit protein L10

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,180,1350AG100.0% 347.1 / NA 93E47G (GAA→GGA) rplJ50S ribosomal subunit protein L10
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (41/52);  total (41/52)

GGCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGAAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCGGGCGC  >  NC_000913/4179998‑4180267
                                                                                                                                         |                                                                                                                                    
ggCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAg                                                                                                                                    <  2:1713440/140‑1 (MQ=255)
 gCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGc                                                                                                                                   <  1:499381/140‑1 (MQ=255)
 gCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGc                                                                                                                                   <  2:289011/140‑1 (MQ=255)
 gCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGc                                                                                                                                   <  1:1378436/140‑1 (MQ=255)
   tttAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTg                                                                                                                                 <  1:1494636/140‑1 (MQ=255)
    ttAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTgg                                                                                                                                >  2:536064/1‑140 (MQ=255)
     tAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGc                                                                                                                               <  2:1537189/140‑1 (MQ=255)
     tAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGc                                                                                                                               >  2:1215283/1‑140 (MQ=255)
        aTCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGta                                                                                                                            <  1:1215283/140‑1 (MQ=255)
          cTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGtata                                                                                                                          <  1:536064/140‑1 (MQ=255)
              aaGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATg                                                                                                                      >  1:1190399/1‑140 (MQ=255)
                  caaacaaGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCgtg                                                                                                                  <  1:1626385/140‑1 (MQ=255)
                  caaacaaGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCgtg                                                                                                                  <  2:1706091/140‑1 (MQ=255)
                   aaacaaGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCgtgt                                                                                                                 >  2:275570/1‑140 (MQ=255)
                    aacaaGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGtgtt                                                                                                                <  2:1219869/140‑1 (MQ=255)
                          cGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGt                                                                                                          >  1:198081/1‑140 (MQ=255)
                             ttgttgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTa                                                                                                         <  1:650323/138‑1 (MQ=255)
                             ttgttgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTa                                                                                                         >  2:650323/1‑138 (MQ=255)
                             ttgttgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAac                                                                                                       >  1:1068215/1‑140 (MQ=255)
                             ttgttgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAac                                                                                                       >  2:274884/1‑140 (MQ=255)
                              tgttgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAaca                                                                                                      <  1:248798/140‑1 (MQ=255)
                                 tgCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACAccc                                                                                                   >  1:1371833/1‑140 (MQ=255)
                                     gAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCctgct                                                                                               <  2:1460424/140‑1 (MQ=255)
                                             cGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTg                                                                                       <  2:468703/140‑1 (MQ=255)
                                             cGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTg                                                                                       >  2:286759/1‑140 (MQ=255)
                                             cGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTg                                                                                       <  1:4826/140‑1 (MQ=255)
                                             cGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTg                                                                                       <  1:353122/140‑1 (MQ=255)
                                             cGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTAGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTg                                                                                       <  1:1638926/140‑1 (MQ=255)
                                                 gTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGt                                                                                   <  2:1371833/140‑1 (MQ=255)
                                                  tAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGtt                                                                                  >  1:213858/1‑140 (MQ=255)
                                                       aaaGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAgg                                                                             >  2:231199/1‑140 (MQ=255)
                                                          ggCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTAc                                                                          >  2:134149/1‑140 (MQ=255)
                                                                  gTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCg                                                                  <  1:275570/140‑1 (MQ=255)
                                                                   tCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCTGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGa                                                                 <  2:65865/140‑1 (MQ=255)
                                                                   tCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGa                                                                 >  2:1571110/1‑140 (MQ=255)
                                                                    cTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAg                                                                >  1:1084003/1‑140 (MQ=255)
                                                                    cTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAg                                                                <  1:274884/140‑1 (MQ=255)
                                                                           agtTGTGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGa                                                         >  2:311734/1‑140 (MQ=255)
                                                                             ttGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGcc                                                            <  2:978401/135‑1 (MQ=255)
                                                                             ttGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGcc                                                            >  1:978401/1‑135 (MQ=255)
                                                                             ttGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGaaa                                                       >  2:1291046/1‑140 (MQ=255)
                                                                             ttGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGaaa                                                       >  1:1134505/1‑140 (MQ=255)
                                                                               gCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGa                                                     >  2:919168/1‑140 (MQ=255)
                                                                               gCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGa                                                     >  2:1541907/1‑140 (MQ=255)
                                                                               gCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTAAAGGTACTCCGTTCGAGTGCCTGAAAGa                                                     <  2:1380948/140‑1 (MQ=255)
                                                                                 ggATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGAcg                                                   >  1:676779/1‑140 (MQ=255)
                                                                                     tcaagTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTGGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGtt                                               >  2:1134615/5‑140 (MQ=255)
                                                                                     tCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGtt                                               >  1:61397/1‑140 (MQ=255)
                                                                                       ccGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTttg                                             <  1:1571110/140‑1 (MQ=255)
                                                                                        cGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTttgt                                            <  1:684673/140‑1 (MQ=255)
                                                                                                   tGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGAccc                                 <  1:286759/140‑1 (MQ=255)
                                                                                                      aGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGa                              >  2:1126411/1‑140 (MQ=255)
                                                                                                      aGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGa                              >  2:1135901/1‑140 (MQ=255)
                                                                                                          aaaaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTGCTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGc                          <  2:1190399/140‑1 (MQ=255)
                                                                                                           aaaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  2:198081/140‑1 (MQ=255)
                                                                                                           aaaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  1:1630070/140‑1 (MQ=255)
                                                                                                           aaaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  2:1426039/140‑1 (MQ=255)
                                                                                                           aaaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  1:1126411/140‑1 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               >  1:396661/1‑133 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               <  1:381760/133‑1 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               >  2:381760/1‑133 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               <  2:396661/133‑1 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         >  1:463573/1‑139 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  2:463573/139‑1 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCAt                        >  1:537475/1‑140 (MQ=255)
                                                                                                            aaTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCAt                        >  1:144035/1‑140 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGAc                                   >  2:114140/1‑128 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGAc                                   <  1:114140/128‑1 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       <  1:1135901/140‑1 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       <  1:1312403/140‑1 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       >  1:1636821/1‑140 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       <  2:1068215/140‑1 (MQ=255)
                                                                                                             aTGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       <  2:963211/140‑1 (MQ=255)
                                                                                                              tGACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATAc                      >  2:374269/1‑140 (MQ=255)
                                                                                                               gACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         >  1:671902/1‑136 (MQ=255)
                                                                                                               gACTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  2:671902/136‑1 (MQ=255)
                                                                                                                aCTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATActc                    <  1:231199/140‑1 (MQ=255)
                                                                                                                aCTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATActc                    <  2:537475/140‑1 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               <  2:743177/128‑1 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               >  1:743177/1‑128 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               <  2:652434/128‑1 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTg                               >  1:652434/1‑128 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTCGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       <  2:132317/136‑1 (MQ=255)
                                                                                                                 cTGAACTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTCGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATa                       >  1:132317/1‑136 (MQ=255)
                                                                                                                      cTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         >  2:691350/1‑129 (MQ=255)
                                                                                                                      cTGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCa                         <  1:691350/129‑1 (MQ=255)
                                                                                                                       tGCGTAAAGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGaa             <  2:1580782/140‑1 (MQ=255)
                                                                                                                            aaaGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACAccc        <  1:1541907/140‑1 (MQ=255)
                                                                                                                             aaGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCg       <  1:94979/140‑1 (MQ=255)
                                                                                                                              aGCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCgg      >  2:830816/1‑140 (MQ=255)
                                                                                                                               gCAGGTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCggg     <  1:134149/140‑1 (MQ=255)
                                                                                                                                  ggTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCGGgcgc  <  1:830816/140‑1 (MQ=255)
                                                                                                                                   gTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCggg     <  1:1465984/136‑1 (MQ=255)
                                                                                                                                   gTCGCGGAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCggg     >  2:1465984/1‑136 (MQ=255)
                                                                                                                                         |                                                                                                                                    
GGCTTTAAATCTTCAAGACAAACAAGCGATTGTTGCTGAAGTCAGCGAAGTAGCCAAAGGCGCGCTGTCTGCAGTAGTTGCGGATTCCCGTGGCGTAACTGTAGATAAAATGACTGAACTGCGTAAAGCAGGTCGCGAAGCTGGCGTATACATGCGTGTTGTTCGTAACACCCTGCTGCGCCGTGCTGTTGAAGGTACTCCGTTCGAGTGCCTGAAAGACGCGTTTGTTGGTCCGACCCTGATTGCATACTCTATGGAACACCCGGGCGC  >  NC_000913/4179998‑4180267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A