Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,377,958	T→C	V329V (GTA→GTG)	ampC ←	beta‑lactamase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,377,958	0	T	C	100.0%	261.6 / NA	75	V329V (GTA→GTG)	ampC	beta‑lactamase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (36/39); total (36/39)

CGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGG  >  NC_000913/4377822‑4378093

cGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCAcc                                                                                                                                      >  1:1013089/1‑140 (MQ=255)

cGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCAcc                                                                                                                                      >  2:1217978/1‑140 (MQ=255)

 gTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCAccc                                                                                                                                     <  2:803610/140‑1 (MQ=255)

  ttAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCa                                                                                                                                    >  1:1159692/1‑140 (MQ=255)

   tAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCat                                                                                                                                   <  1:155909/140‑1 (MQ=255)

     aGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCatga                                                                                                                                 >  1:1362758/1‑140 (MQ=255)

      gAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCatgat                                                                                                                                <  2:627988/140‑1 (MQ=255)

      gAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCatgat                                                                                                                                <  2:569620/140‑1 (MQ=255)

         tCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATgcg                                                                                                                             >  1:983580/1‑140 (MQ=255)

          cTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAG‑TTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGcgcg                                                                                                                           >  2:1352969/1‑140 (MQ=255)

           tGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGcgcg                                                                                                                           >  1:1503424/1‑140 (MQ=255)

           tGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGcgcg                                                                                                                           <  1:1378051/140‑1 (MQ=255)

            gCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGt                                                                                                                          <  1:609248/140‑1 (MQ=255)

               aGGCGGCGTCGACTCTCGCTGGATTGGGATAG‑TTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTg                                                                                                                      <  1:1352969/140‑1 (MQ=255)

                 gcggcgTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGc                                                                                                                     >  1:630480/1‑140 (MQ=255)

                 gcggcgTCGACTCTCGCTGGATTGGGATAGTTTTGGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTATTATGCACCCATGATGCGCGTACTGc                                                                                                                     >  2:1516759/1‑140 (MQ=255)

                     cgTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGa                                                                                                                 <  2:1159692/140‑1 (MQ=255)

                                  tGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTaa                                                                                                    <  2:1362758/140‑1 (MQ=255)

                                   ggATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAAt                                                                                                   >  1:1063395/1‑140 (MQ=255)

                                    gATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATc                                                                                                  >  2:1499017/1‑140 (MQ=255)

                                        gggATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCtt                                                                                              >  1:419269/1‑140 (MQ=255)

                                              gTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACgg                                                                                        >  2:799953/1‑140 (MQ=255)

                                              gTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACgg                                                                                        >  1:958646/1‑140 (MQ=255)

                                                ttttGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACgggg                                                                                      <  2:945537/140‑1 (MQ=255)

                                                 tttgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACgg                                                                                        >  2:1238242/1‑137 (MQ=255)

                                                 tttgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACgg                                                                                        <  1:1238242/137‑1 (MQ=255)

                                                   tgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAAt                                                                                                   >  1:613067/1‑124 (MQ=255)

                                                   tgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAAt                                                                                                   <  2:613067/124‑1 (MQ=255)

                                                   tgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGt                                                                                   >  2:779002/1‑140 (MQ=255)

                                                   tgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGt                                                                                   <  1:779002/140‑1 (MQ=255)

                                                   tgtttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGCTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGt                                                                                   >  2:1143607/1‑140 (MQ=255)

                                                     tttgCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGtgc                                                                                 <  2:1063395/140‑1 (MQ=255)

                                                        gCCAGCATCACGATTCCCAGCTCTTTTTCTGGAATAAACGCGACATAGCCACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTTCTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGtgctgc                                                                              <  2:601995/140‑1 (MQ=255)

                                                             cATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTg                                                                         >  2:2261/1‑140 (MQ=255)

                                                                 aCGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGCTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAAt                                                                     <  1:1143607/140‑1 (MQ=255)

                                                                      ccccAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTAt                                                                <  2:630480/139‑1 (MQ=255)

                                                                      aCCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTAt                                                                >  1:606797/1‑140 (MQ=255)

                                                                       cccAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTAtt                                                               >  1:1230523/1‑140 (MQ=255)

                                                                        ccAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCa                                                                       >  1:1345267/1‑131 (MQ=255)

                                                                        ccAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCa                                                                       <  2:1345267/131‑1 (MQ=255)

                                                                         cAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGt                                                             <  2:958646/140‑1 (MQ=255)

                                                                          aGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTc                                                            >  2:62380/1‑140 (MQ=255)

                                                                          aGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTc                                                            >  2:1156544/1‑140 (MQ=255)

                                                                          aGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTc                                                            >  2:460068/1‑140 (MQ=255)

                                                                          aGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTc                                                            >  1:1367386/1‑140 (MQ=255)

                                                                          aGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCCGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTc                                                            >  2:104422/1‑140 (MQ=255)

                                                                           gCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCa                                                           >  1:1156419/1‑140 (MQ=255)

                                                                            ctctTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCAc                                                          >  1:894776/1‑140 (MQ=255)

                                                                            ctctTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCAc                                                          >  1:557541/1‑140 (MQ=255)

                                                                             tctTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACt                                                         <  2:1503424/140‑1 (MQ=255)

                                                                             tctTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACt                                                         <  1:1001543/140‑1 (MQ=255)

                                                                               tttttCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGc                                                       >  2:682496/1‑140 (MQ=255)

                                                                                ttttCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGcc                                                      <  2:1230523/140‑1 (MQ=255)

                                                                                 tttCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCg                                                     >  2:590419/1‑140 (MQ=255)

                                                                                      ggAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTa                                                                 >  1:418423/1‑123 (MQ=255)

                                                                                      ggAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTa                                                                 <  2:418423/123‑1 (MQ=255)

                                                                                      ggAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAat                                                >  2:540650/1‑140 (MQ=255)

                                                                                         aTAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTTGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAatgat                                             <  2:983580/140‑1 (MQ=255)

                                                                                         aTAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAatgat                                             <  2:419269/140‑1 (MQ=255)

                                                                                          tAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAatgatg                                            <  2:606797/140‑1 (MQ=255)

                                                                                             aCGCGACATAGTTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTCCTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTg                                         <  2:498287/140‑1 (MQ=255)

                                                                                             aCGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTg                                         <  1:741853/140‑1 (MQ=255)

                                                                                              cgcgACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGt                                        <  1:1499017/140‑1 (MQ=255)

                                                                                                            cAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGc                          <  1:1156544/140‑1 (MQ=255)

                                                                                                            cAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGc                          <  1:460068/140‑1 (MQ=255)

                                                                                                            cAAATCCGCCGGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGc                          <  1:2261/140‑1 (MQ=255)

                                                                                                                  cgccgGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTcc                    >  1:743541/1‑140 (MQ=255)

                                                                                                                     cgGTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGc                 >  2:76897/1‑140 (MQ=255)

                                                                                                                      ggTCGCCCCTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCa                >  1:503341/1‑140 (MQ=255)

                                                                                                                           ccccTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcc           <  1:540650/140‑1 (MQ=255)

                                                                                                                           ccccTGTTTTATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcc           <  1:729561/140‑1 (MQ=255)

                                                                                                                                 ttttATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcccagccc     <  1:104422/140‑1 (MQ=255)

                                                                                                                                 ttttATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcccagccc     <  1:799953/140‑1 (MQ=255)

                                                                                                                                 ttttATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcccagccc     <  2:894776/140‑1 (MQ=255)

                                                                                                                                  tttATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTcccagccca    <  2:557541/140‑1 (MQ=255)

                                                                                                                                    tATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAgg  <  1:103342/140‑1 (MQ=255)

                                                                                                                                    tATGCACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAgg  <  1:590419/140‑1 (MQ=255)

CGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATACCCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGG  >  NC_000913/4377822‑4378093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A