Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
183 |
98.6 |
3427438 |
96.9% |
3321187 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,589,056 |
(T)7→8 |
coding (24/204 nt) |
yjiX ← |
conserved protein YjiX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,589,049 | 1 | . | T | 97.1%
| 237.7
/ ‑0.8
| 68 | coding (31/204 nt) | yjiX | conserved protein YjiX |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (34/32); total (36/32) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGTAGCGCGCGTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑TTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACG > NC_000913/4588910‑4589178
|
ccgTAGCGCGCGTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGat‑a < 1:1634736/140‑1 (MQ=255)
cgcgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑tttttttt > 1:955593/1‑139 (MQ=255)
gcgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttg < 1:385618/140‑3 (MQ=255)
gcgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttg < 1:173948/140‑3 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGTGAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 1:1062624/140‑4 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 2:684033/140‑4 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 1:1476454/140‑4 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 1:1503109/140‑4 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 2:894432/140‑4 (MQ=255)
cgTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑ttttttttgc < 1:283561/140‑4 (MQ=255)
tCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGTGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTg > 2:54469/1‑140 (MQ=255)
cGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTa < 2:955593/140‑1 (MQ=255)
ttCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAg < 2:673835/140‑1 (MQ=255)
tCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGt > 2:1291498/1‑140 (MQ=255)
cgcgGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCATAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGtt > 1:957896/1‑140 (MQ=255)
gcgGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTa > 2:1499247/1‑140 (MQ=255)
cgGAAGAATTCTTCATAGCTCATGTACGGCTTGTTGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTAc < 2:445340/140‑1 (MQ=255)
gaaTTCTTCATAGCTCATGTACGGCTTGTCGTGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAAc < 1:54469/140‑1 (MQ=255)
gaaTTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAAc < 1:612847/140‑1 (MQ=255)
gaaTTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAAc < 2:1470612/140‑1 (MQ=255)
tcATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTc < 2:69894/140‑1 (MQ=255)
cATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCa < 2:662436/140‑1 (MQ=255)
tAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCAct < 1:974440/140‑1 (MQ=255)
tAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCAct < 2:1051374/140‑1 (MQ=255)
tAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCAct < 2:131985/140‑1 (MQ=255)
tAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCAct < 1:1499247/140‑1 (MQ=255)
aGCACATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCActc > 1:1402806/1‑140 (MQ=255)
cTCATGTACGGCTTGTCGGGATGGTTTGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTg > 1:1238420/1‑140 (MQ=255)
cATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGAt < 1:1702796/140‑1 (MQ=255)
tGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATaa < 2:1402806/140‑1 (MQ=255)
gTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAg > 2:632175/1‑140 (MQ=255)
ccGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGaa < 2:993069/139‑1 (MQ=255)
cGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAAc > 1:880710/1‑140 (MQ=255)
cGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAAc > 1:734244/1‑140 (MQ=255)
cGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAAc > 2:1436436/1‑140 (MQ=255)
gCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACaa > 1:572837/1‑140 (MQ=255)
cTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATa > 1:675573/1‑132 (MQ=255)
cTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATa < 2:675573/132‑1 (MQ=255)
gTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGcc > 1:1183893/1‑140 (MQ=255)
gTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGcc > 1:1401249/1‑140 (MQ=255)
gTCGGGATGGCTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGcc > 2:930993/1‑140 (MQ=255)
gATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCccgcc < 2:880710/140‑1 (MQ=255)
tggtCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCg < 2:1238420/140‑1 (MQ=255)
cTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCg > 1:595116/1‑136 (MQ=255)
cTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCg < 2:595116/136‑1 (MQ=255)
tCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTa < 2:1401249/140‑1 (MQ=255)
cATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTaa < 1:1675864/140‑1 (MQ=255)
tatGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATCT‑TTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAac > 2:628852/1‑140 (MQ=255)
tatGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAac < 2:734244/140‑1 (MQ=255)
cTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTaa < 2:1452023/134‑1 (MQ=255)
cTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTaa > 1:1452023/1‑134 (MQ=255)
cTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACgg > 2:291293/1‑140 (MQ=255)
cTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACgg > 2:783931/1‑140 (MQ=255)
tCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGt < 1:1291498/140‑1 (MQ=255)
aCGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAg > 1:353317/1‑140 (MQ=255)
aCGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAg > 1:300903/1‑140 (MQ=255)
gTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAgtg < 2:747069/140‑1 (MQ=255)
aGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAacac < 1:1644024/130‑1 (MQ=255)
aGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAacac > 2:1644024/1‑130 (MQ=255)
tCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGaa > 2:302717/1‑140 (MQ=255)
tCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑TTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCt > 1:1392063/1‑140 (MQ=255)
cTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCt > 1:1468797/1‑140 (MQ=255)
gAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCa > 2:1568362/1‑140 (MQ=255)
gAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCa > 2:1005541/1‑140 (MQ=255)
gAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTACACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCa > 2:1189579/1‑140 (MQ=255)
tGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgc > 1:495000/1‑140 (MQ=255)
ccAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgccg < 1:291293/140‑1 (MQ=255)
ccAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgccg > 1:62961/1‑140 (MQ=255)
cAATCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgccgc > 2:97431/1‑140 (MQ=255)
aTCAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCt > 2:844151/1‑140 (MQ=255)
cAACATCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTc < 2:572837/140‑1 (MQ=255)
tCTTCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGGTAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGa > 2:1168729/1‑140 (MQ=255)
ttCGCCGCCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGAtt < 1:930993/140‑1 (MQ=255)
cgccgcCTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTgg > 2:1691521/1‑140 (MQ=255)
cTGGCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTa < 1:302717/140‑1 (MQ=255)
ggCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTc < 2:590675/123‑1 (MQ=255)
ggCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTc > 1:590675/1‑123 (MQ=255)
ggCCGAGAT‑ATTTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACg < 1:1681587/140‑1 (MQ=255)
|
CCGTAGCGCGCGTTCTGGCGTTCGCGGAAGAATTCTTCATAGCTCATGTACGGCTTGTCGGGATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGAT‑A‑TTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACG > NC_000913/4588910‑4589178
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
