Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	141,108	A→G	S40P (TCC→CCC)	gcd ←	quinoprotein glucose dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	141,108	0	A	G	98.8%	557.5 / ‑1.0	161	coding (118/2391 nt)	gcd	quinoprotein glucose dehydrogenase
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (76/83); minor base . (1/1); total (77/84)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-01

Only 100 of 162 total aligned reads displayed.

AAACCAACTTCCCAGACGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGAGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCATTTCAA  >  NC_000913/140972‑141243

aaaCCAACTTCCCAGACGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGgcc                                                                                                                                      >  2:156034/1‑140 (MQ=255)

       cTTCCCAGACGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATc                                                                                                                               >  1:575916/1‑140 (MQ=255)

              gACGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGAcca                                                                                                                        >  1:826867/1‑140 (MQ=255)

                cGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGAccagc                                                                                                                      <  1:156034/140‑1 (MQ=255)

                  ccccAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGGCGCCAATCGCGAccagcca                                                                                                                    >  2:329967/1‑140 (MQ=255)

                  ccccAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGAccagcca                                                                                                                    >  1:40953/1‑140 (MQ=255)

                  ccccAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGAccagcca                                                                                                                    >  1:1026173/1‑140 (MQ=255)

                           aTGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGcc                                                                                                           <  1:498783/140‑1 (MQ=255)

                           aTGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGG‑GCCGCCAATcgcg                                                                                                                            <  2:1068968/122‑1 (MQ=255)

                            tGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCa                                                                                                          <  2:1623431/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGcc                                                                                                           <  2:875395/138‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  1:932356/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  2:1924998/1‑140 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  2:40953/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  2:1026173/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  2:634786/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  2:744928/1‑140 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  2:818732/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  2:959512/1‑140 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  1:1924998/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  1:1058151/1‑140 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  1:1211767/1‑140 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  1:156786/140‑1 (MQ=255)

                             ggTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAAGCGACGCCGAGCATCACAAGACCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  1:485632/1‑140 (MQ=255)

                               tGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATg                                                                                                       >  2:1225192/1‑140 (MQ=255)

                               tGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATg                                                                                                       <  2:838270/140‑1 (MQ=255)

                                 ccGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAg                                                                                                     <  1:87339/140‑1 (MQ=255)

                                 ccGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAg                                                                                                     >  2:1411164/1‑140 (MQ=255)

                                    agcagcAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         >  2:2378036/1‑133 (MQ=255)

                                    agcagcAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  1:2378036/133‑1 (MQ=255)

                                    agcagcAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCaa                                                                                                         <  1:1490005/133‑1 (MQ=255)

                                    agcagcAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAg                                                                                                  >  2:387073/1‑140 (MQ=255)

                                    agcagcAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAg                                                                                                  >  1:1226808/1‑140 (MQ=255)

                                         cagGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACa                                                                                             >  2:614033/1‑140 (MQ=255)

                                              cTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCg                                                                                        >  1:1803871/1‑140 (MQ=255)

                                                gCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCa                                                                                      <  1:2293369/140‑1 (MQ=255)

                                                 cGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCaa                                                                                     >  2:1719017/1‑140 (MQ=255)

                                                   tataGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAg                                                                                   >  1:801053/1‑140 (MQ=255)

                                                   tataGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAg                                                                                   >  2:1266971/1‑140 (MQ=255)

                                                      aGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAgcgc                                                                                >  2:847424/1‑140 (MQ=255)

                                                        ccAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTg                                                                              >  2:1728221/1‑140 (MQ=255)

                                                        ccAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTg                                                                              >  2:1788994/1‑140 (MQ=255)

                                                           aaGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCaa                                                                           >  1:903956/1‑140 (MQ=255)

                                                            aGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCaaa                                                                          >  1:327643/1‑140 (MQ=255)

                                                               gcggcgcgTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAg                                                                       <  1:600692/140‑1 (MQ=255)

                                                                cggcgcgTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAgg                                                                      >  2:1388862/1‑140 (MQ=255)

                                                                cggcgcgTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAgg                                                                      >  1:1184065/1‑140 (MQ=255)

                                                                  gcgcgTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCaaa                                                                          <  1:1688864/134‑1 (MQ=255)

                                                                  gcgcgTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCaaa                                                                          >  2:1688864/1‑134 (MQ=255)

                                                                             gcgcCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGa                                                         >  2:75734/1‑140 (MQ=255)

                                                                               gcCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACg                                                       >  1:1655305/1‑140 (MQ=255)

                                                                               gcCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACg                                                       >  2:518942/1‑140 (MQ=255)

                                                                                ccACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGa                                                      >  1:885774/1‑140 (MQ=255)

                                                                                       aTCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAAtcg                                               <  1:694836/140‑1 (MQ=255)

                                                                                        tCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAAtcgt                                              >  1:266849/1‑140 (MQ=255)

                                                                                        tCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGACAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTG‑AAAAAGGGCTGTTAGCGTGACGAGTAAtcgtc                                             >  1:2168561/1‑140 (MQ=255)

                                                                                          cgggCGACGCCGAGCACCACAGGGCCAGCGATAGGGTAGTACCGGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAAtcgtcg                                            <  2:1184065/138‑1 (MQ=255)

                                                                                           aGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTcgc                                           >  1:337320/1‑140 (MQ=255)

                                                                                            ggCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTcgcg                                          <  2:903956/140‑1 (MQ=255)

                                                                                            ggCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTcgcg                                          <  2:1803871/140‑1 (MQ=255)

                                                                                             gCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGa                                                      >  1:631178/1‑127 (MQ=255)

                                                                                             gCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTcgcg                                          >  2:2018919/1‑139 (MQ=255)

                                                                                             gCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGa                                         <  2:1526791/140‑1 (MQ=255)

                                                                                              cGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAg                                        <  1:75734/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  1:1462489/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  2:1655305/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  2:2083269/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  2:624877/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  1:1912730/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  2:1484596/140‑1 (MQ=255)

                                                                                               gACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  1:961613/140‑1 (MQ=255)

                                                                                                aCGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGcc                                      >  2:1500552/1‑140 (MQ=255)

                                                                                                aCGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGcc                                      >  1:1318831/1‑140 (MQ=255)

                                                                                                aCGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGcc                                      >  2:889130/1‑140 (MQ=255)

                                                                                                 cGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  2:819206/138‑1 (MQ=255)

                                                                                                 cGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       >  1:819206/1‑138 (MQ=255)

                                                                                                  gCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTg                                    >  1:565803/1‑140 (MQ=255)

                                                                                                    cGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTa                                  <  2:1936503/140‑1 (MQ=255)

                                                                                                         aTCACAAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGtt                             <  1:1388862/140‑1 (MQ=255)

                                                                                                           cacaAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTaa                           <  1:1728221/140‑1 (MQ=255)

                                                                                                             caAGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAAtt                         <  1:744928/140‑1 (MQ=255)

                                                                                                               aGGCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGc                       >  1:884477/1‑140 (MQ=255)

                                                                                                                ggCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGc                                       <  1:947275/123‑1 (MQ=255)

                                                                                                                 gCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCa                     <  1:2006234/140‑1 (MQ=255)

                                                                                                                 gCCAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCa                     <  2:273262/140‑1 (MQ=255)

                                                                                                                  ccAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCAt                    >  1:1322109/1‑140 (MQ=255)

                                                                                                                  ccAGCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCAt                    <  1:1746853/140‑1 (MQ=255)

                                                                                                                     gCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATaaa                 >  2:468272/1‑140 (MQ=255)

                                                                                                                     gCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATaaa                 >  1:1693929/1‑140 (MQ=255)

                                                                                                                     gCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATaaa                 >  1:389410/1‑140 (MQ=255)

                                                                                                                     gCGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATaaa                 >  1:2042802/1‑140 (MQ=255)

                                                                                                                      cGATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAag                >  2:1180224/1‑140 (MQ=255)

                                                                                                                       gATAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAaga               <  1:2119459/140‑1 (MQ=255)

                                                                                                                         tAGGGTAGTACCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAgaga             <  2:1322109/140‑1 (MQ=255)

                                                                                                                           gggTAGTACCAGGGGCCGACAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTG‑AAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGacac          <  2:2168561/140‑1 (MQ=255)

                                                                                                                              tagtaCCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCa        >  1:465693/1‑140 (MQ=255)

                                                                                                                               agtaCCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCAt       >  2:667605/1‑140 (MQ=255)

                                                                                                                                gtaCCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCAt                    >  2:529991/1‑126 (MQ=255)

                                                                                                                                  aCCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCATTTc    <  1:295051/140‑1 (MQ=255)

                                                                                                                                  aCCAGGGGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCATTTc    <  1:20605/140‑1 (MQ=255)

AAACCAACTTCCCAGACGCCCCAAATCATGGTGCCGAGCAGCAGGGCTGCGTATAGCCAAAGCGCGGCGCGTTTACTGCGCCACAGCATCCAGGCGACGCCGAGCATCACAAGGCCAGCGATAGGGTAGTACCAGGAGCCGCCAATCGCGACCAGCCAGCCTCCGCCAATGAGTAGATACAGCCCGCAAAGCGCTGCAAAAAGGGCTGTTAGCGTGACGAGTAATCGTCGCGAGCCTGTATTGTTAATTGCCATAAAGAGACACCATTTCAA  >  NC_000913/140972‑141243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A