Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	144,694	A→G	S40G (AGC→GGC)	yadI →	putative PTS enzyme IIA component YadI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	144,694	0	A	G	100.0%	304.2 / NA	85	S40G (AGC→GGC)	yadI	putative PTS enzyme IIA component YadI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/50); total (35/50)

TCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAAGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCATTATTAAGCCACAAACACTCCCG  >  NC_000913/144558‑144830

tCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGct                                                                                                                                       <  2:464596/140‑1 (MQ=255)

   gCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTa                                                                                                                                    <  1:423638/140‑1 (MQ=255)

     tAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAat                                                                                                                                  <  2:207151/140‑1 (MQ=255)

          aggaAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCt                                                                                                                             <  1:81955/140‑1 (MQ=255)

          aggaAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCt                                                                                                                             <  2:16448/140‑1 (MQ=255)

          aggaAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCt                                                                                                                             <  1:626221/140‑1 (MQ=255)

              aGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGc                                                                                                                         >  2:992540/1‑140 (MQ=255)

                  gATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGCGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCa                                                                                                                     <  2:691958/140‑1 (MQ=255)

                    tGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCatg                                                                                                                   <  1:895647/140‑1 (MQ=255)

                    tGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCatg                                                                                                                   <  1:574572/140‑1 (MQ=255)

                      ttAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCatgat                                                                                                                 <  1:864533/140‑1 (MQ=255)

                         ggTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGAtgtg                                                                                                              <  2:790417/140‑1 (MQ=255)

                           ttGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCg                                                                                                            <  1:799360/140‑1 (MQ=255)

                           ttGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCg                                                                                                            <  2:419600/140‑1 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCatg                                                                                                                   >  2:530127/1‑130 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCatg                                                                                                                   <  1:530127/130‑1 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCg                                                                                                            <  2:65723/137‑1 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCg                                                                                                            >  1:65723/1‑137 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATg                                                                                                         >  2:948088/1‑140 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATg                                                                                                         >  1:948073/1‑140 (MQ=255)

                              ggTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATg                                                                                                         >  2:686854/1‑140 (MQ=255)

                               gTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGc                                                                                                        <  2:792691/140‑1 (MQ=255)

                               gTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGc                                                                                                        <  2:1057468/140‑1 (MQ=255)

                               gTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGc                                                                                                        <  2:479544/140‑1 (MQ=255)

                                tAATTACCTGTCATGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGct                                                                                                       <  1:1072260/140‑1 (MQ=255)

                                tAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGct                                                                                                       <  2:115150/140‑1 (MQ=255)

                                tAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGct                                                                                                       <  1:100229/140‑1 (MQ=255)

                                         gTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGaa                                                                                              >  1:213979/1‑140 (MQ=255)

                                           cACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGc                                                                                            <  2:346101/140‑1 (MQ=255)

                                           cACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGc                                                                                            <  2:12542/140‑1 (MQ=255)

                                           cACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGc                                                                                            <  1:992540/140‑1 (MQ=255)

                                              gATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGa                                                                                         <  2:143952/140‑1 (MQ=255)

                                               aTGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGAc                                                                                        <  2:213979/140‑1 (MQ=255)

                                                 gACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGActc                                                                                      >  2:814104/1‑140 (MQ=255)

                                                 gACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGActc                                                                                      >  2:9026/1‑140 (MQ=255)

                                                      ggCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCa                                                                                                  >  2:848854/1‑123 (MQ=255)

                                                      ggCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCa                                                                                                  <  1:848854/123‑1 (MQ=255)

                                                      ggCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTg                                                                                 <  1:814104/140‑1 (MQ=255)

                                                              agaTACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTc                                                                         <  2:948073/140‑1 (MQ=255)

                                                              agaTACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTc                                                                         <  1:686854/140‑1 (MQ=255)

                                                               gaTACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCa                                                                        <  1:934456/140‑1 (MQ=255)

                                                                aTACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCAt                                                                       >  2:300696/1‑140 (MQ=255)

                                                                 tACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCAtc                                                                      >  2:29815/1‑140 (MQ=255)

                                                                  aCTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTc                                                                         <  2:868485/136‑1 (MQ=255)

                                                                  aCTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTc                                                                         >  1:868485/1‑136 (MQ=255)

                                                                     ggATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCAtcttct                                                                  >  1:366805/1‑140 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTg                                                                                 >  1:737899/1‑123 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTg                                                                                 <  2:737899/123‑1 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGa                                                                                >  2:732333/1‑124 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGa                                                                                <  1:732333/124‑1 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAgg                                                                              >  2:677751/1‑126 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAgg                                                                              <  1:677751/126‑1 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTa                                                                >  2:44894/1‑140 (MQ=255)

                                                                       aTGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGATCTGCATGAAGCGGACTCTGGTGAGGGTGTCAtcttctaa                                                                >  2:1046164/1‑138 (MQ=255)

                                                                        tGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCa                                                                        <  2:84827/131‑1 (MQ=255)

                                                                        tGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCa                                                                        >  1:84827/1‑131 (MQ=255)

                                                                         gcgcTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAAc                                                              >  2:1015047/1‑140 (MQ=255)

                                                                          cgcTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAAcc                                                             >  2:905982/1‑140 (MQ=255)

                                                                          cgcTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAAcc                                                             >  1:665864/1‑140 (MQ=255)

                                                                                  aaaaaaCATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGc                                                     <  1:948088/140‑1 (MQ=255)

                                                                                  aaaaaaCATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGc                                                     <  1:300696/140‑1 (MQ=255)

                                                                                      aaCATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTaa                                                               <  2:86113/126‑1 (MQ=255)

                                                                                      aaCATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTaa                                                               >  1:86113/1‑126 (MQ=255)

                                                                                       aCATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAg                                                <  1:1015047/140‑1 (MQ=255)

                                                                                         aTGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGATCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAgcg                                              <  1:1046164/140‑1 (MQ=255)

                                                                                           ggggCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGcc                                            >  2:358454/1‑140 (MQ=255)

                                                                                            gggCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAAcc                                                             >  1:728007/1‑122 (MQ=255)

                                                                                            gggCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAAcc                                                             <  2:728007/122‑1 (MQ=255)

                                                                                                    cttcAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATcg                                   >  1:531366/1‑140 (MQ=255)

                                                                                                     ttcAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATcgc                                  <  1:44894/140‑1 (MQ=255)

                                                                                                       cAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGt                                >  2:543879/1‑140 (MQ=255)

                                                                                                         gTGCCGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTgg                              >  2:812006/1‑140 (MQ=255)

                                                                                                            ccGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCtt                           <  1:543879/140‑1 (MQ=255)

                                                                                                            ccGGGCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCtt                           >  1:797333/1‑140 (MQ=255)

                                                                                                               ggCCGTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCat                        >  2:68589/1‑140 (MQ=255)

                                                                                                                   gTGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCattatt                    <  1:9026/140‑1 (MQ=255)

                                                                                                                    tGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCAttatta                   >  1:1001745/1‑140 (MQ=255)

                                                                                                                    tGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCAttatta                   >  2:489599/1‑140 (MQ=255)

                                                                                                                    tGAATTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCAttatta                   >  1:932107/1‑140 (MQ=255)

                                                                                                                      aaTTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATcgcg                                 >  1:432215/1‑124 (MQ=255)

                                                                                                                      aaTTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATcgcg                                 <  2:432215/124‑1 (MQ=255)

                                                                                                                       aTTTCTGGCGCGGATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCATTATTAAGc                <  2:531366/140‑1 (MQ=255)

                                                                                                                                  ggATTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCATTATTAAGCCACAAACCCTc     <  1:1023844/140‑1 (MQ=255)

                                                                                                                                    aTTAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCACCACCGTATCGCGTGACTTCATTATTAAGCCACAAACACTccc   <  1:587097/140‑1 (MQ=255)

                                                                                                                                     ttAGGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCATTATTAAGCCACAAACACTCCCg  <  2:366805/140‑1 (MQ=255)

TCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGCGCTGGAGAAAAAACATGGGGCACTTCTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAAGCTCTAATATGCTCAGCCGCATGATGTGCGATGCTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTATCGCGTGGCTTCATTATTAAGCCACAAACACTCCCG  >  NC_000913/144558‑144830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A