Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,404,074 A→G L164L (CTT→CTC)  abgA ← p‑aminobenzoyl‑glutamate hydrolase subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,404,0740AG100.0% 402.4 / NA 111L164L (CTT→CTC) abgAp‑aminobenzoyl‑glutamate hydrolase subunit A
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (58/53);  total (58/53)

Only 100 of 111 total aligned reads displayed.

AATGTGCACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTAAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTGAGATCCAGCG  >  NC_000913/1403939‑1404210
                                                                                                                                       |                                                                                                                                        
aaTGTGCACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAggg                                                                                                                                      >  2:861257/1‑140 (MQ=255)
 aTGTGCACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGt                                                                                                                                     <  2:1428727/140‑1 (MQ=255)
      cACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATgcg                                                                                                                                >  2:444847/1‑140 (MQ=255)
      cACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATgcg                                                                                                                                >  2:294274/1‑140 (MQ=255)
       aCGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATgcgc                                                                                                                               <  1:702324/140‑1 (MQ=255)
         ggCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCa                                                                                                                             >  2:1107167/1‑140 (MQ=255)
           cAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagc                                                                                                                           >  2:218864/1‑140 (MQ=255)
              tAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagccca                                                                                                                        >  2:1216088/1‑140 (MQ=255)
              tAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagccca                                                                                                                        >  2:1874114/1‑140 (MQ=255)
              tAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagccca                                                                                                                        >  2:1904673/1‑140 (MQ=255)
              tAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagccca                                                                                                                        <  2:2172486/140‑1 (MQ=255)
                aaaTAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagcccaag                                                                                                                      <  1:1216088/140‑1 (MQ=255)
                   taatCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCagcccaagccc                                                                                                                   >  1:1178387/1‑140 (MQ=255)
                     atCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAgcccaagcccaa                                                                                                                 >  1:1250778/1‑140 (MQ=255)
                     atCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAgcccaagcccaa                                                                                                                 >  1:298460/1‑140 (MQ=255)
                     atCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAgcccaagcccaa                                                                                                                 >  1:664649/1‑140 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGGCGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAACCCAAGCCCAATg                                                                                                               <  1:160016/140‑1 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGCCGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATg                                                                                                               >  2:410699/1‑140 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATg                                                                                                               <  2:1313264/140‑1 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATg                                                                                                               <  2:861818/140‑1 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATg                                                                                                               <  1:695821/140‑1 (MQ=255)
                       cAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATg                                                                                                               <  1:1107167/140‑1 (MQ=255)
                        aaCATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATgg                                                                                                              >  1:1536351/1‑140 (MQ=255)
                        aaCATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATgg                                                                                                              >  1:694557/1‑140 (MQ=255)
                          catcatCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCg                                                                                                            <  2:144979/140‑1 (MQ=255)
                          catcatCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCg                                                                                                            <  1:210075/140‑1 (MQ=255)
                           atcatcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCgg                                                                                                           >  1:114711/1‑140 (MQ=255)
                            tcatcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGt                                                                                                          <  1:437389/140‑1 (MQ=255)
                            tcatcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGt                                                                                                          <  2:2071857/140‑1 (MQ=255)
                             catcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTa                                                                                                         <  1:1184355/140‑1 (MQ=255)
                               tcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATg                                                                                                       >  2:2387284/1‑140 (MQ=255)
                               tcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATg                                                                                                       >  2:131750/1‑140 (MQ=255)
                               tcTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGATTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGCATg                                                                                                       >  1:1188630/1‑140 (MQ=255)
                                cTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCgg                                                                                                           >  2:1638177/1‑135 (MQ=255)
                                cTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCgg                                                                                                           <  1:1638177/135‑1 (MQ=255)
                                cTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGt                                                                                                      >  2:1615154/1‑140 (MQ=255)
                                      cacCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCcatca                                                                                                <  1:294274/140‑1 (MQ=255)
                                      cacCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCcatca                                                                                                <  2:664649/140‑1 (MQ=255)
                                       acCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGt                                                                                                          <  2:1919697/129‑1 (MQ=255)
                                       acCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGt                                                                                                          >  1:1919697/1‑129 (MQ=255)
                                       acCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCcatcat                                                                                               <  1:1721722/140‑1 (MQ=255)
                                       acCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCcatcat                                                                                               >  2:1997697/1‑140 (MQ=255)
                                        ccTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATg                                                                                              >  1:2266743/1‑140 (MQ=255)
                                         cTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGa                                                                                             >  2:1177311/1‑140 (MQ=255)
                                         cTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGa                                                                                             >  2:2125614/1‑140 (MQ=255)
                                            cATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          <  1:1904673/140‑1 (MQ=255)
                                            cATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          <  1:861257/140‑1 (MQ=255)
                                             aTCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACcac                                                                                         >  1:1977618/1‑140 (MQ=255)
                                                 aCCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          <  1:861489/135‑1 (MQ=255)
                                                 aCCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          >  2:861489/1‑135 (MQ=255)
                                                 aCCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGgc                                                                                     <  1:206857/140‑1 (MQ=255)
                                                      cGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCGCAGgcatgca                                                                                >  2:2085698/1‑140 (MQ=255)
                                                      cGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGgcatgca                                                                                >  1:872161/1‑140 (MQ=255)
                                                      cGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGgcatgca                                                                                >  1:602591/1‑140 (MQ=255)
                                                            cgcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCTGTATGTCCATCATGACCACAGGCATGCATCATTc                                                                          >  1:1689287/1‑140 (MQ=255)
                                                            cgcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          <  2:1723286/124‑1 (MQ=255)
                                                            cgcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACca                                                                                          >  1:1723286/1‑124 (MQ=255)
                                                            cgcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTc                                                                          <  1:1776263/140‑1 (MQ=255)
                                                            cgcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTc                                                                          >  2:760655/1‑140 (MQ=255)
                                                             gcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAATTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTcc                                                                         >  2:80639/1‑140 (MQ=255)
                                                             gcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTcc                                                                         >  2:1761697/1‑140 (MQ=255)
                                                             gcgcCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTcc                                                                         >  2:891428/1‑140 (MQ=255)
                                                                      gTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAATTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACa                                                                <  1:80639/140‑1 (MQ=255)
                                                                      gTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACa                                                                <  2:2240223/140‑1 (MQ=255)
                                                                      gTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACa                                                                <  2:302090/140‑1 (MQ=255)
                                                                             ccTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGTGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCa                                                         >  2:524715/1‑140 (MQ=255)
                                                                              ctctGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCaa                                                        <  2:872161/140‑1 (MQ=255)
                                                                               tctGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCaaa                                                       >  1:2372926/1‑140 (MQ=255)
                                                                                   cAGGCTTAAACATCAGTTTGACGACGCCATGTCGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCg                                                   >  2:114492/1‑140 (MQ=255)
                                                                                    aGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGt                                                  <  1:1615154/140‑1 (MQ=255)
                                                                                    aGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGt                                                  <  1:1684390/140‑1 (MQ=255)
                                                                                     ggCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTc                                                 >  2:2248596/1‑140 (MQ=255)
                                                                                      gCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTcg                                                >  1:1911188/1‑140 (MQ=255)
                                                                                           aaaaTCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTa                                           <  2:694557/140‑1 (MQ=255)
                                                                                           aaaaTCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTa                                           <  2:1536351/140‑1 (MQ=255)
                                                                                                cAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGc                                      <  1:890670/140‑1 (MQ=255)
                                                                                                cAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGc                                      <  1:1997697/140‑1 (MQ=255)
                                                                                                 aGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCg                                     <  1:2085698/140‑1 (MQ=255)
                                                                                                 aGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCg                                     <  1:2387284/140‑1 (MQ=255)
                                                                                                  gTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCTGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGa                                    <  2:1689287/140‑1 (MQ=255)
                                                                                                   tttGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGAt                                   <  1:399750/140‑1 (MQ=255)
                                                                                                   tttGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGAt                                   <  1:814412/140‑1 (MQ=255)
                                                                                                    ttGATGACGCCATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATg                                  >  1:1277206/1‑140 (MQ=255)
                                                                                                             ccATGTAGTCCGGACTCGAACTGTTTGAGGGTATGTGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATc                         <  1:524715/140‑1 (MQ=255)
                                                                                                             ccATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATc                         <  2:84639/140‑1 (MQ=255)
                                                                                                             ccATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATc                         >  1:1000999/1‑140 (MQ=255)
                                                                                                             ccATGTAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATc                         <  2:2266743/140‑1 (MQ=255)
                                                                                                                  tAGTCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGct                    <  1:2125614/140‑1 (MQ=255)
                                                                                                                     tCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCtt                 <  2:477848/140‑1 (MQ=255)
                                                                                                                     tCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCtt                 <  1:444847/140‑1 (MQ=255)
                                                                                                                     tCCGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCtt                 >  2:1105624/1‑140 (MQ=255)
                                                                                                                      ccGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTc                >  1:729190/1‑140 (MQ=255)
                                                                                                                      ccGGACTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTc                >  1:1272698/1‑140 (MQ=255)
                                                                                                                          aCTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTg            >  2:1726042/1‑140 (MQ=255)
                                                                                                                          aCTCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTg            >  2:1203468/1‑140 (MQ=255)
                                                                                                                            tCGAACTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTgag          >  2:669878/1‑140 (MQ=255)
                                                                                                                               aaCTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGctc                   >  2:85659/1‑128 (MQ=255)
                                                                                                                               aaCTGTTTGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGctc                   <  1:85659/128‑1 (MQ=255)
                                                                                                                                    tttGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTGAGATCCAgcg  <  1:410699/140‑1 (MQ=255)
                                                                                                                                    tttGAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTGAGATCCAgcg  <  2:1977618/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
AATGTGCACGGCAGTAAAATAATCAACATCATCTACGACACCTGCATCGACCATCGCCCGCGCGCCACGCGTACCTTCCTCTGCAGGCTGAAAAATCAGTTTGATGACGCCATGTAGTCCGGACTCGAACTGTTTAAGGGTATGCGCCAGCCCAAGCCCAATGGCGGTATGTCCATCATGACCACAGGCATGCATCATTCCGGCGTTACATGACGCAAAACCGTCGCGGTAGGGGCGATGGCTGACATCCTGCTCTTCACTGAGATCCAGCG  >  NC_000913/1403939‑1404210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A