Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,576,260	A→G	Y454H (TAT→CAT)	yddB ←	putative TonB‑dependent receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,576,260	0	A	G	100.0%	510.7 / NA	140	Y454H (TAT→CAT)	yddB	putative TonB‑dependent receptor
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (70/70); total (70/70)

Only 100 of 141 total aligned reads displayed.

TGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAG  >  NC_000913/1576123‑1576390

tGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCa                                                                                                                                  >  2:1088105/1‑140 (MQ=255)

tGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCa                                                                                                                                  >  2:83126/1‑140 (MQ=255)

tGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCa                                                                                                                                  >  1:1422668/1‑140 (MQ=255)

       tGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTa                                                                                                                           >  2:567634/1‑140 (MQ=255)

       tGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTa                                                                                                                           <  2:1189499/140‑1 (MQ=255)

       tGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTa                                                                                                                           <  2:1422668/140‑1 (MQ=255)

        gATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAg                                                                                                                          <  2:575192/140‑1 (MQ=255)

            aGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGt                                                                                                                      >  1:1853925/1‑140 (MQ=255)

            aGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGt                                                                                                                      <  1:1713318/140‑1 (MQ=255)

              cAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTCGTCa                                                                                                                    >  2:1956789/1‑140 (MQ=255)

                        ccATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAggc                                                                                                          <  1:500476/140‑1 (MQ=255)

                           ttCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAggcggc                                                                                                       >  2:924801/1‑140 (MQ=255)

                           ttCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAgg                                                                                                           <  1:637891/136‑1 (MQ=255)

                              cGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctt                                                                                                    <  1:1251839/140‑1 (MQ=255)

                              cGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctt                                                                                                    <  2:1180796/140‑1 (MQ=255)

                              cGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGAATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctt                                                                                                    <  2:1487873/140‑1 (MQ=255)

                                tCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAgg                                                                                                           >  2:1122920/1‑131 (MQ=255)

                                tCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAgg                                                                                                           <  1:1122920/131‑1 (MQ=255)

                                tCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGccttta                                                                                                  >  2:1978008/1‑140 (MQ=255)

                                     aaGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctttaccttt                                                                                             <  2:2205540/140‑1 (MQ=255)

                                     aaGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctttaccttt                                                                                             <  1:2360710/140‑1 (MQ=255)

                                     aaGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGACAATTCCCAGGCGGcctttaccttt                                                                                             <  1:1482593/140‑1 (MQ=255)

                                      aGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctttaccttta                                                                                            >  1:1784286/1‑140 (MQ=255)

                                        cgcgGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGcctttacct                                                                                               <  1:382040/135‑1 (MQ=255)

                                        cgcgGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGccttt                                                                                                   <  1:923372/131‑1 (MQ=255)

                                        cgcgGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATg                                                                                          >  1:1083789/1‑140 (MQ=255)

                                          cgGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGt                                                                                        >  1:1613091/1‑140 (MQ=255)

                                                      gtgGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAatggtatggt                                                                            <  2:1613091/140‑1 (MQ=255)

                                                           ttGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGtt                                                                       >  2:936400/1‑140 (MQ=255)

                                                           ttGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGtt                                                                       <  2:840801/140‑1 (MQ=255)

                                                            tGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGttt                                                                      >  2:750193/1‑140 (MQ=255)

                                                              aCAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTtttc                                                                    >  2:1109424/1‑140 (MQ=255)

                                                                     gTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCgg                                                             <  2:576846/140‑1 (MQ=255)

                                                                     gTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCgg                                                             <  2:454229/140‑1 (MQ=255)

                                                                      ttGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGgc                                                            <  2:1083789/140‑1 (MQ=255)

                                                                        gtcatagtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGgcag                                                          >  2:2058695/1‑140 (MQ=255)

                                                                          catagtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGgcagca                                                        >  2:1333679/1‑140 (MQ=255)

                                                                          catagtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGgcagca                                                        <  2:1580661/140‑1 (MQ=255)

                                                                            tagtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATAGTATGGTTAGTTTTCTTTCCGgcagca                                                        <  1:1567315/138‑1 (MQ=255)

                                                                             agtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTa                                                     >  2:468092/1‑140 (MQ=255)

                                                                             agtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTa                                                     >  1:690119/1‑140 (MQ=255)

                                                                              gtcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTaa                                                    >  2:1203785/1‑140 (MQ=255)

                                                                               tcataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAAt                                                   <  1:936400/140‑1 (MQ=255)

                                                                                cataCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATc                                                  <  1:1939684/140‑1 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGTTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               >  2:2248793/1‑140 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               >  1:1913422/1‑140 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               >  1:571195/1‑140 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               >  1:2241143/1‑140 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               <  1:750193/140‑1 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               >  1:1329363/1‑140 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATcaca                                               <  1:2003092/140‑1 (MQ=255)

                                                                                   aCCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGGATGGTTAGTTTTCTTTCCGGCAGCATTATTcaca                                               >  1:399886/1‑140 (MQ=255)

                                                                                    ccGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACAt                                              <  1:696797/140‑1 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTGCCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAgg                                           >  1:1521777/1‑140 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACAt                                              <  2:180837/137‑1 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAgg                                           >  1:678458/1‑140 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAgg                                           >  1:651860/1‑140 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAgg                                           >  1:1507694/1‑140 (MQ=255)

                                                                                       cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAgg                                           >  2:296101/1‑140 (MQ=255)

                                                                                         cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGAt                                         <  2:1913422/140‑1 (MQ=255)

                                                                                         cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGAt                                         >  2:1315788/1‑140 (MQ=255)

                                                                                         cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGAt                                         <  2:571195/140‑1 (MQ=255)

                                                                                          gCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGAt                                         >  2:12594/1‑139 (MQ=255)

                                                                                          gCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGAt                                         <  1:12594/139‑1 (MQ=255)

                                                                                           ccGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTc                                       >  1:751718/1‑140 (MQ=255)

                                                                                             gggCCTTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAg                                     <  2:2215221/140‑1 (MQ=255)

                                                                                             gggCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAg                                     <  2:751718/140‑1 (MQ=255)

                                                                                                cATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACt                                  <  1:2407484/140‑1 (MQ=255)

                                                                                                  ttAATGACACATTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTgg                                <  1:2179494/140‑1 (MQ=255)

                                                                                                         cacaTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAg                                     >  2:46801/1‑128 (MQ=255)

                                                                                                         cacaTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAg                                     <  1:46801/128‑1 (MQ=255)

                                                                                                           caTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGt                       <  2:1336080/140‑1 (MQ=255)

                                                                                                           caTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGt                       >  2:1580377/1‑140 (MQ=255)

                                                                                                           caTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGt                       <  1:838263/140‑1 (MQ=255)

                                                                                                            aTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGtt                      <  2:342021/140‑1 (MQ=255)

                                                                                                            aTTACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGtt                      <  2:1759587/140‑1 (MQ=255)

                                                                                                             ttACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATg                           <  2:2018310/134‑1 (MQ=255)

                                                                                                             ttACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATg                           >  1:2018310/1‑134 (MQ=255)

                                                                                                             ttACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTc                     >  1:2346932/1‑140 (MQ=255)

                                                                                                             ttACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTc                     >  2:544208/1‑140 (MQ=255)

                                                                                                              tACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCa                    >  1:1006382/1‑140 (MQ=255)

                                                                                                              tACGCCAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCa                    >  1:2221633/1‑140 (MQ=255)

                                                                                                                   cAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCa               <  1:544208/140‑1 (MQ=255)

                                                                                                                   cAGCTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCa               <  2:2346932/140‑1 (MQ=255)

                                                                                                                      cTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCa               >  2:2342643/1‑137 (MQ=255)

                                                                                                                      cTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCa               <  1:2342643/137‑1 (MQ=255)

                                                                                                                      cTAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGc            >  1:1045540/1‑140 (MQ=255)

                                                                                                                       tAATGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACGTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCa           <  1:23446/140‑1 (MQ=255)

                                                                                                                        aaTGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCAt          <  1:1949066/140‑1 (MQ=255)

                                                                                                                        aaTGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCAt          <  1:1203785/140‑1 (MQ=255)

                                                                                                                          tGCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCg        >  1:57884/1‑140 (MQ=255)

                                                                                                                           gCGATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCgg       <  2:671995/140‑1 (MQ=255)

                                                                                                                             gATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa     <  1:1580377/140‑1 (MQ=255)

                                                                                                                             gATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa     <  2:651860/140‑1 (MQ=255)

                                                                                                                             gATCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa     <  1:1585480/140‑1 (MQ=255)

                                                                                                                             gATCCGCCATATGCAGCGTGTAGTCGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa     <  1:1956789/140‑1 (MQ=255)

                                                                                                                              aTCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCa           <  2:1539328/133‑1 (MQ=255)

                                                                                                                               tCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTGTGGCGTTCAGTCCACGCATCGGAATa   >  1:1797779/1‑140 (MQ=255)

                                                                                                                               tCCGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATa   >  1:1372995/1‑140 (MQ=255)

                                                                                                                                ccGCCATATGCAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAg  >  2:7707/1‑140 (MQ=255)

TGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAG  >  NC_000913/1576123‑1576390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A