Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,614,688 C→A A6S (GCA→TCA)  sad ← NAD(+)‑dependent succinate semialdehyde dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,614,6880CA100.0% 408.4 / NA 113A6S (GCA→TCA) sadNAD(+)‑dependent succinate semialdehyde dehydrogenase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (49/64);  total (49/64)

Only 100 of 114 total aligned reads displayed.

ATATTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGCCGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATCTGACC  >  NC_000913/1614555‑1614815
                                                                                                                                     |                                                                                                                               
 tatTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTTTCGAAATTGCATGAGTTGACGGAGTa                                                                                                                          <  2:2029000/140‑1 (MQ=255)
 tatTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTa                                                                                                                          >  2:274743/1‑140 (MQ=255)
  atTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTaa                                                                                                                         >  1:1072165/1‑140 (MQ=255)
  atTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTaa                                                                                                                         >  1:403542/1‑140 (MQ=255)
  atTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTaa                                                                                                                         >  1:1808882/1‑140 (MQ=255)
   tttGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCACCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAAt                                                                                                                        <  1:989266/140‑1 (MQ=255)
    ttGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTTTCGAAATTGCATGAGTTGACGGAGTAATg                                                                                                                       >  1:600857/1‑140 (MQ=255)
    ttGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATg                                                                                                                       >  2:1035731/1‑140 (MQ=255)
    ttGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATg                                                                                                                       >  2:160628/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  2:2209875/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  2:34065/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  1:1734374/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  2:496432/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  1:1916405/1‑140 (MQ=255)
      gTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGt                                                                                                                     >  2:1605968/1‑140 (MQ=255)
       tctcGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTc                                                                                                                    >  1:1649032/1‑140 (MQ=255)
         tcGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATg                                                                                                                       <  2:377512/135‑1 (MQ=255)
         tcGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATg                                                                                                                       >  1:377512/1‑135 (MQ=255)
         tcGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCAt                                                                                                                  >  2:336726/1‑140 (MQ=255)
          cgcgCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATc                                                                                                                 <  1:516988/140‑1 (MQ=255)
          cgcgCCAGTAGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATc                                                                                                                 <  1:1547129/140‑1 (MQ=255)
           gcgcCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCg                                                                                                                >  2:1987259/1‑140 (MQ=255)
           gcgcCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCg                                                                                                                >  2:43403/1‑140 (MQ=255)
           gcgcCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCg                                                                                                                >  1:1496714/1‑140 (MQ=255)
            cgcCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCgg                                                                                                               >  2:758164/1‑140 (MQ=255)
            cgcCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCgg                                                                                                               >  1:518102/1‑140 (MQ=255)
               cAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGt                                                                                                            <  2:1167974/140‑1 (MQ=255)
               cAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGt                                                                                                            <  1:336726/140‑1 (MQ=255)
               cAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGt                                                                                                            <  2:804589/140‑1 (MQ=255)
                aGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTa                                                                                                           <  1:899254/140‑1 (MQ=255)
                aGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTa                                                                                                           <  1:568759/140‑1 (MQ=255)
                aGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTa                                                                                                           <  2:376756/140‑1 (MQ=255)
                 gTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATc                                                                                                                 >  2:574072/1‑133 (MQ=255)
                 gTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAt                                                                                                          <  2:1734374/140‑1 (MQ=255)
                 gTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAt                                                                                                          >  2:2360771/1‑140 (MQ=255)
                  tCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAtc                                                                                                         <  1:307061/140‑1 (MQ=255)
                  tCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAtc                                                                                                         <  1:639057/140‑1 (MQ=255)
                  tCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAtc                                                                                                         <  1:1952202/140‑1 (MQ=255)
                    gcgAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTAtctc                                                                                                       <  2:1191636/140‑1 (MQ=255)
                       aaaGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCtt                                                                                                    >  2:577342/1‑140 (MQ=255)
                       aaaGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCtt                                                                                                    >  2:1678739/1‑140 (MQ=255)
                        aaGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCttt                                                                                                   <  1:1035731/140‑1 (MQ=255)
                          gCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTAt                                                                                                 <  2:518102/140‑1 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTa                                                                                                           <  2:195932/127‑1 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTa                                                                                                           >  1:195932/1‑127 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAg                                                                                              <  1:34065/140‑1 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAg                                                                                              <  1:160628/140‑1 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAg                                                                                              <  2:1072165/140‑1 (MQ=255)
                             tgctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAg                                                                                              <  1:43403/140‑1 (MQ=255)
                              gctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGt                                                                                             >  2:1938580/1‑140 (MQ=255)
                              gctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGt                                                                                             <  1:496432/140‑1 (MQ=255)
                              gctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGt                                                                                             <  1:463376/140‑1 (MQ=255)
                               ctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTc                                                                                            >  2:2138791/1‑140 (MQ=255)
                               ctgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTc                                                                                            <  1:1605968/140‑1 (MQ=255)
                                tgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCa                                                                                           <  1:325101/140‑1 (MQ=255)
                                tgcCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCa                                                                                           <  2:1286420/140‑1 (MQ=255)
                                  ccgccAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATg                                                                                         <  1:2138791/140‑1 (MQ=255)
                                  ccgccAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATCGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATg                                                                                         <  1:1622278/140‑1 (MQ=255)
                                    gccTGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGt                                                                                             >  2:850002/1‑134 (MQ=255)
                                       aGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGCTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATg                                                                                    <  2:1496714/140‑1 (MQ=255)
                                        gCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGa                                                                                   <  1:942668/140‑1 (MQ=255)
                                            aaGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGAt                                                                               >  1:2067155/1‑140 (MQ=255)
                                               tGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            <  2:1808882/140‑1 (MQ=255)
                                               tGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            <  1:2360771/140‑1 (MQ=255)
                                               tGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            <  1:274743/140‑1 (MQ=255)
                                               tGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            <  1:1872812/140‑1 (MQ=255)
                                                          tatCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTActc                                                                 <  1:812251/140‑1 (MQ=255)
                                                          tatCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTActc                                                                 <  2:1888458/140‑1 (MQ=255)
                                                           atCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTActct                                                                <  2:2067155/140‑1 (MQ=255)
                                                            tCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            <  2:1317495/127‑1 (MQ=255)
                                                            tCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACg                                                                            >  1:1317495/1‑127 (MQ=255)
                                                            tCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCtt                                                               >  2:2020413/1‑140 (MQ=255)
                                                             cGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTg                                                              >  2:1638727/1‑140 (MQ=255)
                                                               tCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCt                                                            <  1:1938580/140‑1 (MQ=255)
                                                                   cgcCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTaa                                                        >  1:121452/1‑140 (MQ=255)
                                                                    gcCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTaaa                                                       <  1:577342/140‑1 (MQ=255)
                                                                      cAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAAt                                                     >  2:1487551/1‑140 (MQ=255)
                                                                        gCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCtt                                                               >  1:1075484/1‑128 (MQ=255)
                                                                        gCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGa                                                   >  1:689090/1‑140 (MQ=255)
                                                                         cccACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGaa                                                  <  1:1487551/140‑1 (MQ=255)
                                                                         cccACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGaa                                                  <  1:1453352/140‑1 (MQ=255)
                                                                         cccACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGaa                                                  <  1:1178005/140‑1 (MQ=255)
                                                                          ccACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGaat                                                 <  1:1987259/140‑1 (MQ=255)
                                                                                cagcaCAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATAtt                                           <  2:740423/140‑1 (MQ=255)
                                                                                   cacaGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAg                                        >  2:82806/1‑140 (MQ=255)
                                                                                   cacaGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAg                                        >  2:573354/1‑140 (MQ=255)
                                                                                              gttCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCa                             <  1:2184800/140‑1 (MQ=255)
                                                                                                      gTGGCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCga                     >  2:931428/1‑140 (MQ=255)
                                                                                                         gCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  >  1:1048404/1‑140 (MQ=255)
                                                                                                         gCAGGATTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  <  1:758164/140‑1 (MQ=255)
                                                                                                              aTTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  <  1:861953/135‑1 (MQ=255)
                                                                                                              aTTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  >  2:861953/1‑135 (MQ=255)
                                                                                                              aTTTATCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTa             <  1:904993/140‑1 (MQ=255)
                                                                                                                  aTCGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGa         >  1:2352347/1‑140 (MQ=255)
                                                                                                                    cGAAATTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATc       >  1:2231200/1‑140 (MQ=255)
                                                                                                                       aaTTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATATGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  >  2:599516/1‑126 (MQ=255)
                                                                                                                       aaTTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATATGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGaa                  <  1:599516/126‑1 (MQ=255)
                                                                                                                       aaTTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATCTGa    <  1:931428/140‑1 (MQ=255)
                                                                                                                        aTTGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATCTGAc   <  2:1477319/140‑1 (MQ=255)
                                                                                                                         ttGCATGAGTTGACGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATCTGAcc  <  1:336995/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                               
ATATTTGTCTCGCGCCAGTCGCGAAAGCCTGCTGCCGCCAGCTGAAGTGCGTTTTCGATATCGTCAGCGCCAGCCCACGGCAGCACAGAAAGTTGTTCACCCGTGGCAGGATTTATCGAAATTGCATGAGTTGCCGGAGTAATGGTCATCGGGGTATCTCCTTTATGAGTCATGGTATGAAGATACGCAGATTTACTCTTGCTTTAAAATGAATAATATTAAGCCACTTATTCACGAATCGAGAATGCTATGGATCTGACC  >  NC_000913/1614555‑1614815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A