Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,624,188 G→A P104S (CCG→TCG)  ydeI ← BOF family protein YdeI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,624,1880GA100.0% 309.1 / NA 89P104S (CCG→TCG) ydeIBOF family protein YdeI
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/42);  total (47/42)

TAACCCAATACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGGCTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGC  >  NC_000913/1624053‑1624324
                                                                                                                                       |                                                                                                                                        
tAACCCAATACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGa                                                                                                                                      >  1:2097287/1‑140 (MQ=255)
     cAATACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTtc                                                                                                                                 <  1:2184108/140‑1 (MQ=255)
      aaTACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTtct                                                                                                                                >  1:850628/1‑140 (MQ=255)
      aaTACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTtct                                                                                                                                >  1:548561/1‑140 (MQ=255)
        tACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCATACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCg                                                                                                                              <  2:548561/140‑1 (MQ=255)
        tACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCg                                                                                                                              >  1:1292082/1‑140 (MQ=255)
        tACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCg                                                                                                                              <  2:630915/140‑1 (MQ=255)
         aCCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGt                                                                                                                             <  1:1437231/140‑1 (MQ=255)
             tAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCAt                                                                                                                         >  2:944115/1‑140 (MQ=255)
             tAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCAt                                                                                                                         >  2:147453/1‑140 (MQ=255)
             tAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCAt                                                                                                                         >  2:188638/1‑140 (MQ=255)
             tAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCAt                                                                                                                         >  1:619242/1‑140 (MQ=255)
             tAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCAt                                                                                                                         >  1:277593/1‑140 (MQ=255)
              aaTGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATc                                                                                                                        >  1:537337/1‑140 (MQ=255)
              aaTGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATc                                                                                                                        >  2:2162481/1‑140 (MQ=255)
                  gCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAg                                                                                                                    >  2:711496/1‑140 (MQ=255)
                    ccAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGAc                                                                                                                  <  2:1074795/140‑1 (MQ=255)
                     cAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACg                                                                                                                 >  2:869054/1‑140 (MQ=255)
                     cAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACg                                                                                                                 >  1:1514656/1‑140 (MQ=255)
                       gtagtTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGCCCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGc                                                                                                               <  2:486768/140‑1 (MQ=255)
                        tagtTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGcc                                                                                                              <  1:869054/140‑1 (MQ=255)
                          gtTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGc                                                                                                            <  1:2162481/140‑1 (MQ=255)
                                gCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAAt                                                                                                      >  2:220436/1‑140 (MQ=255)
                                  cATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGcc                                                                                                              >  1:340011/1‑130 (MQ=255)
                                  cATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGcc                                                                                                              <  2:340011/130‑1 (MQ=255)
                                  cATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATaa                                                                                                    <  2:861865/140‑1 (MQ=255)
                                  cATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATaa                                                                                                    >  1:168918/1‑140 (MQ=255)
                                     cAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGa                                                                                                 >  1:1880792/1‑140 (MQ=255)
                                      aGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGAc                                                                                                <  2:619242/140‑1 (MQ=255)
                                       ggCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACa                                                                                               <  2:1609943/140‑1 (MQ=255)
                                           aaTTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTaa                                                                                           <  2:1720564/140‑1 (MQ=255)
                                             tttatttttattTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAAtt                                                                                         <  1:2088390/140‑1 (MQ=255)
                                              ttatttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAAttt                                                                                        <  1:945148/140‑1 (MQ=255)
                                                atttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCa                                                                                      <  2:1968090/140‑1 (MQ=255)
                                                 tttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCAc                                                                                     <  1:711496/140‑1 (MQ=255)
                                                  ttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCAcc                                                                                    >  1:499374/1‑140 (MQ=255)
                                                  ttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCAcc                                                                                    >  2:1161736/1‑140 (MQ=255)
                                                  ttttatttCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCAcc                                                                                    >  2:6523/1‑140 (MQ=255)
                                                           tGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATc                                                                           >  1:813828/1‑140 (MQ=255)
                                                            gCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATcg                                                                          >  2:245253/1‑140 (MQ=255)
                                                                   aGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGaaaaa                                                                   <  1:147453/140‑1 (MQ=255)
                                                                     tGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACg                                                                 >  2:1914086/1‑140 (MQ=255)
                                                                     tGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACg                                                                 >  2:1773404/1‑140 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:813828/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:2175992/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:168918/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:474088/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:165940/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  2:537337/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  1:1258754/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  1:232833/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  1:188638/140‑1 (MQ=255)
                                                                        cccGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  1:951719/140‑1 (MQ=255)
                                                                          cGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACg                                                            <  1:6523/140‑1 (MQ=255)
                                                                          cGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACg                                                            <  2:850628/140‑1 (MQ=255)
                                                                           gAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACgg                                                           >  1:2067877/1‑140 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGaaaaa                                                                   <  1:592575/131‑1 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGaaaaa                                                                   >  2:592575/1‑131 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              <  1:79208/136‑1 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTaa                                                              >  2:79208/1‑136 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACg                                                            <  2:2117315/138‑1 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACg                                                            >  1:2117315/1‑138 (MQ=255)
                                                                            aaCGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGt                                                          >  2:131764/1‑140 (MQ=255)
                                                                                 cggccggcGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCctct                                                     <  2:1880792/140‑1 (MQ=255)
                                                                                   gccggcGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTcc                                                   >  2:47869/1‑140 (MQ=255)
                                                                                   gccggcGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTcc                                                   >  2:967218/1‑140 (MQ=255)
                                                                                            cTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTgaga                                          <  1:51210/140‑1 (MQ=255)
                                                                                              tttCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGaaa                                        <  2:1514656/140‑1 (MQ=255)
                                                                                                   tATCCAGACTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCaaa                                   <  2:277593/140‑1 (MQ=255)
                                                                                                          aCTGCCACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACcgc                            >  2:1417031/1‑140 (MQ=255)
                                                                                                              ccACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAg                        >  1:2159288/1‑140 (MQ=255)
                                                                                                              ccACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAg                        >  1:1385411/1‑140 (MQ=255)
                                                                                                              ccACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAg                        <  2:2097287/140‑1 (MQ=255)
                                                                                                               cACTAATGTTGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGt                       >  1:2251537/1‑140 (MQ=255)
                                                                                                                        tGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGaa              >  1:1345898/1‑140 (MQ=255)
                                                                                                                        tGATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGaa              >  1:1624526/1‑140 (MQ=255)
                                                                                                                         gATCATCTGGTCCGACTGAACTTCTCGTCTATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAg             >  1:1726461/1‑140 (MQ=255)
                                                                                                                         gATCATCTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAg             <  1:47869/140‑1 (MQ=255)
                                                                                                                          atcatcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAgc            >  1:464629/1‑140 (MQ=255)
                                                                                                                          atcatcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAgc            >  1:1131862/1‑140 (MQ=255)
                                                                                                                           tcatcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAgcg           <  1:1773404/140‑1 (MQ=255)
                                                                                                                            catcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAgcgc          >  1:1819887/1‑140 (MQ=255)
                                                                                                                              tcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCa        >  2:2156171/1‑140 (MQ=255)
                                                                                                                              tcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCa        >  1:2098018/1‑140 (MQ=255)
                                                                                                                              tcTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCa        <  2:1385411/140‑1 (MQ=255)
                                                                                                                               cTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAg             >  1:888243/1‑134 (MQ=255)
                                                                                                                               cTGGTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAg             <  2:888243/134‑1 (MQ=255)
                                                                                                                                 ggTCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCg     >  1:658117/1‑140 (MQ=255)
                                                                                                                                   tCCGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTg   >  1:1471604/1‑140 (MQ=255)
                                                                                                                                    ccGACTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGc  <  2:2159288/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TAACCCAATACCCTAATGGCCCAGTAGTTCAGGCCATCAGGCTAATTTATTTTTATTTCTGCAAATGAGTGACCCGAACGACGGCCGGCGCGCTTTTCTTATCCAGACTGCCACTAATGTTGATCATCTGGTCCGGCTGAACTTCTCGTCCATCAAAGACGGCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGC  >  NC_000913/1624053‑1624324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A