Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,713,392 T→C G208G (GGT→GGC)  dtpA → dipeptide/tripeptide:H(+) symporter DtpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,713,3920TC100.0% 405.5 / NA 112G208G (GGT→GGC) dtpAdipeptide/tripeptide:H(+) symporter DtpA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (53/59);  total (53/59)

Only 100 of 112 total aligned reads displayed.

TTCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGC  >  NC_000913/1713261‑1713526
                                                                                                                                   |                                                                                                                                      
 tctcTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCa                                                                                                                               <  2:1326482/140‑1 (MQ=255)
     tATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACt                                                                                                                           >  1:702586/1‑140 (MQ=255)
     tATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACt                                                                                                                           >  1:96048/1‑140 (MQ=255)
     tATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACt                                                                                                                           >  2:1410787/1‑140 (MQ=255)
      aTGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACtt                                                                                                                          >  1:1579747/1‑140 (MQ=255)
      aTGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACtt                                                                                                                          <  1:981959/140‑1 (MQ=255)
      aTGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAAGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACtt                                                                                                                          >  1:1043734/1‑140 (MQ=255)
        gATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCg                                                                                                                        <  2:811162/140‑1 (MQ=255)
          ttGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAg                                                                                                                      <  2:2408647/140‑1 (MQ=255)
          ttGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAg                                                                                                                      >  1:834897/1‑140 (MQ=255)
           tGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGc                                                                                                                     <  2:1060363/140‑1 (MQ=255)
           tGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGc                                                                                                                     <  1:953424/140‑1 (MQ=255)
           tGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGc                                                                                                                     <  1:736559/140‑1 (MQ=255)
            gCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGcc                                                                                                                    >  1:2233797/1‑140 (MQ=255)
             cTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCt                                                                                                                   >  1:1228189/1‑140 (MQ=255)
             cTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTCTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCt                                                                                                                   <  2:1660337/140‑1 (MQ=255)
              tACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTa                                                                                                                  <  2:1930630/140‑1 (MQ=255)
               aCGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTAt                                                                                                                 >  2:509774/1‑140 (MQ=255)
               aCGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTAt                                                                                                                 >  2:1533640/1‑140 (MQ=255)
               aCGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTAt                                                                                                                 >  2:75764/1‑140 (MQ=255)
                 gCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCa                                                                                                               >  2:2211303/1‑140 (MQ=255)
                  ccGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCaa                                                                                                              <  2:2108101/140‑1 (MQ=255)
                     tggctggcCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTa                                                                                                           >  2:1856855/1‑140 (MQ=255)
                             cgcgAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAAcc                                                                                                   <  2:690701/140‑1 (MQ=255)
                                  aaTACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACctgctg                                                                                              <  1:1410787/140‑1 (MQ=255)
                                  aaTACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACctgctg                                                                                              <  2:1579747/140‑1 (MQ=255)
                                    tACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACctgctgct                                                                                            <  1:1856855/140‑1 (MQ=255)
                                     aCGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACctgctgctg                                                                                           <  2:1992768/140‑1 (MQ=255)
                                       ggCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         <  2:1489418/140‑1 (MQ=255)
                                       ggCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         <  1:2202158/140‑1 (MQ=255)
                                       ggCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTAATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         <  1:2039291/140‑1 (MQ=255)
                                        gCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAcc                                                                                        <  2:2233797/140‑1 (MQ=255)
                                         cTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCa                                                                                       >  1:1434744/1‑140 (MQ=255)
                                            gAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCatta                                                                                    >  2:1147482/1‑140 (MQ=255)
                                              gtgtTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGTTGACCattat                                                                                   <  1:2142873/139‑1 (MQ=255)
                                              gtgtTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGTTGACCattat                                                                                   >  2:2142873/1‑139 (MQ=255)
                                               tgtTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTg                                                                                 <  1:1113872/140‑1 (MQ=255)
                                                gtTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTgg                                                                                <  1:2056054/140‑1 (MQ=255)
                                                gtTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTgg                                                                                <  1:2211303/140‑1 (MQ=255)
                                                  tgcgtttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGgtg                                                                              <  1:509774/140‑1 (MQ=255)
                                                  tgcgtttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGgtg                                                                              <  2:134721/140‑1 (MQ=255)
                                                   gcgtttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         <  1:2230237/128‑1 (MQ=255)
                                                   gcgtttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         >  2:2230237/1‑128 (MQ=255)
                                                   gcgtttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGgtgt                                                                             >  2:1743444/1‑140 (MQ=255)
                                                      tttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         <  2:1554812/125‑1 (MQ=255)
                                                      tttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGAc                                                                                         >  1:1554812/1‑125 (MQ=255)
                                                      tttgcgttGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGtgttgt                                                                          >  2:2192048/1‑140 (MQ=255)
                                                                 cGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCg                                                               <  1:2192048/140‑1 (MQ=255)
                                                                 cGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCg                                                               >  2:1241663/1‑140 (MQ=255)
                                                                 cGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCg                                                               <  1:75764/140‑1 (MQ=255)
                                                                 cGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCg                                                               <  1:1962671/140‑1 (MQ=255)
                                                                    tatAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTa                                                            <  2:1042372/138‑1 (MQ=255)
                                                                    tGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCg                                                               <  2:1230390/137‑1 (MQ=255)
                                                                     gTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTAt                                                           <  2:626609/140‑1 (MQ=255)
                                                                        ggCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGc                                                        <  2:834897/140‑1 (MQ=255)
                                                                           ctgctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCAc                                                     <  1:1537336/140‑1 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  2:2164088/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  1:1009712/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  1:1018274/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  2:2357633/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  2:2356074/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  1:1384015/1‑140 (MQ=255)
                                                                              ctgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTg                                                  >  1:1813758/1‑140 (MQ=255)
                                                                               tgATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTgg                                                 <  1:1147482/140‑1 (MQ=255)
                                                                                gATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGgc                                                <  2:1719588/140‑1 (MQ=255)
                                                                                gATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGgc                                                <  2:702586/140‑1 (MQ=255)
                                                                                   cACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGgctgc                                             >  2:1062977/1‑140 (MQ=255)
                                                                                    aCTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGgctgct                                            <  1:93963/140‑1 (MQ=255)
                                                                                     cTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGctgctg                                           <  2:687030/140‑1 (MQ=255)
                                                                                      tATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCtgctgc                                          >  1:3612/1‑140 (MQ=255)
                                                                                       aTCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         <  1:2356074/140‑1 (MQ=255)
                                                                                       aTCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         <  2:2301891/140‑1 (MQ=255)
                                                                                        tCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGcac                                        >  2:1177736/1‑140 (MQ=255)
                                                                                        tCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGcac                                        >  1:1891987/1‑140 (MQ=255)
                                                                                            tAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATc                                    >  2:1499969/1‑140 (MQ=255)
                                                                                             aaCTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCa                                   >  1:1034392/1‑140 (MQ=255)
                                                                                             aaCTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCa                                   >  1:2221638/1‑140 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGctgctg                                           >  1:1866351/1‑127 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGctgctg                                           <  2:1866351/127‑1 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGcac                                        >  1:557299/1‑130 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGcac                                        <  2:557299/130‑1 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         <  1:825917/129‑1 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         >  2:825917/1‑129 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACaa                                      <  2:2019284/132‑1 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACaa                                      >  1:2019284/1‑132 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGACTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         <  1:211985/129‑1 (MQ=255)
                                                                                                  cGCCTTCTGCCAACGCTGGGTTAAACAGTACGACTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGca                                         >  2:211985/1‑129 (MQ=255)
                                                                                                           ccAACGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTa                     <  2:297697/140‑1 (MQ=255)
                                                                                                               cGCTGGGTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGgc                 >  2:552408/1‑140 (MQ=255)
                                                                                                                     gTTAAACAGTACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTggg           <  1:1241663/140‑1 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  <  2:1009712/140‑1 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  1:946868/1‑140 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  1:1145940/1‑140 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  2:2344913/1‑140 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  1:1052287/1‑140 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  2:2282553/1‑140 (MQ=255)
                                                                                                                              tACGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  2:1016771/1‑140 (MQ=255)
                                                                                                                                cGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCgttg      <  2:1856342/134‑1 (MQ=255)
                                                                                                                                cGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  <  1:1624185/138‑1 (MQ=255)
                                                                                                                                cGGCTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGc  >  2:1624185/1‑138 (MQ=255)
                                                                                                                                   |                                                                                                                                      
TTCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAACCTGCTGCTGACCATTATTGGTGTTGTGGCACTGATCGCTATCGCCACCTGGCTGCTGCACAATCAGGAAGTTGCGCGTATGGCGCTGGGCGTTGTTGC  >  NC_000913/1713261‑1713526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A