Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,735,789	T→C	S138P (TCA→CCA)	sodB →	superoxide dismutase (Fe)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,735,789	0	T	C	100.0%	414.7 / NA	115	S138P (TCA→CCA)	sodB	superoxide dismutase (Fe)
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (58/57); total (58/57)

Only 100 of 116 total aligned reads displayed.

TCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGA  >  NC_000913/1735655‑1735924

tCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAAcc                                                                                                                                    >  2:1771707/1‑140 (MQ=255)

 cGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACct                                                                                                                                   <  2:704170/140‑1 (MQ=255)

    tGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTa                                                                                                                                >  1:71612/1‑140 (MQ=255)

     gAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTaa                                                                                                                               <  1:359359/140‑1 (MQ=255)

     gAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTaa                                                                                                                               <  2:310060/140‑1 (MQ=255)

          tATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACC‑GG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCggg                                                                                                                         >  1:669254/1‑140 (MQ=255)

           aTCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCggg                                                                                                                         <  2:104947/140‑1 (MQ=255)

           aTCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCggg                                                                                                                         <  2:2206084/140‑1 (MQ=255)

             cgccgcATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTa                                                                                                                       <  2:601841/140‑1 (MQ=255)

                cgcATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTc                                                                                                                    >  2:970278/1‑140 (MQ=255)

                cgcATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGA‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTc                                                                                                                    >  2:1254749/1‑140 (MQ=255)

                 gcATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTcc                                                                                                                   >  1:1897288/1‑140 (MQ=255)

                  cATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCg                                                                                                                  >  2:690049/1‑140 (MQ=255)

                    tCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCt                                                                                                                <  1:564981/140‑1 (MQ=255)

                    tCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCt                                                                                                                <  1:1034773/140‑1 (MQ=255)

                       tttGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGac                                                                                                             >  1:301821/1‑140 (MQ=255)

                          ggCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACTTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGaccac                                                                                                          <  2:1677640/140‑1 (MQ=255)

                          ggCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGaccat                                                                                                          <  2:2230737/140‑2 (MQ=255)

                             aGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGa                                                                                                       >  2:2214654/1‑140 (MQ=255)

                              gCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGAt                                                                                                      >  1:1273171/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAATACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  2:26727/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  1:2371353/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  1:429523/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  2:373282/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  1:118887/1‑140 (MQ=255)

                               cTTTGCCGATTTCAAAGCGCAGCTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATg                                                                                                     >  2:1245739/1‑140 (MQ=255)

                                  tGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGa                                                                                                  >  2:864977/1‑140 (MQ=255)

                                            aaaGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCgctgct                                                                                        <  1:60143/140‑1 (MQ=255)

                                              aGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGa                                                                                      <  2:1273171/140‑1 (MQ=255)

                                              aGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGa                                                                                      >  2:152289/1‑140 (MQ=255)

                                              aGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGa                                                                                      <  1:633768/140‑1 (MQ=255)

                                              aGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGa                                                                                      <  2:1224650/140‑1 (MQ=255)

                                                   cggtttcTGATGGCGGGATCAAAAACCTTTGTTCTGGGTTGGCCTGGCCGGGTAAAAACCAGCAAT‑GCCAACTTGGTTTTGTTCCAACCTCCTACGGCGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGtt                                                                                 <  2:1699949/134‑1 (MQ=255)

                                                   aGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGtt                                                                                 <  2:1795661/140‑1 (MQ=255)

                                                   aGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGtt                                                                                 >  1:575883/1‑140 (MQ=255)

                                                    gTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTg                                                                                <  2:1897288/140‑1 (MQ=255)

                                                        aCTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGt                                                                            <  2:393901/140‑1 (MQ=255)

                                                          tGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCgctgct                                                                                        >  2:1722960/1‑126 (MQ=255)

                                                          tGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCgctgct                                                                                        <  1:1722960/126‑1 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTc                                                                           >  2:713333/1‑134 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     <  1:1950901/140‑1 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     <  1:864977/140‑1 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     <  2:429523/140‑1 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     >  1:181233/1‑140 (MQ=255)

                                                               cAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     >  2:15808/1‑140 (MQ=255)

                                                                aGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    <  1:690049/140‑1 (MQ=255)

                                                                aGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    <  1:982752/140‑1 (MQ=255)

                                                                aGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    <  2:348649/140‑1 (MQ=255)

                                                                aGCGATCAAAAACTTTGGTTCTGGCTGGACCTGA‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    <  1:1254749/140‑1 (MQ=255)

                                                                 gCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAaca                                                                   >  1:359978/1‑140 (MQ=255)

                                                                  cGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAacac                                                                  <  1:2214654/140‑1 (MQ=255)

                                                                  cGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAacac                                                                  >  1:668864/1‑140 (MQ=255)

                                                                    aTCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTg                                                                                <  1:1222907/124‑1 (MQ=255)

                                                                    aTCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGc                                                                >  2:867794/1‑140 (MQ=255)

                                                                      cAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCtt                                                              <  1:38585/140‑1 (MQ=255)

                                                                      cAAAAACCTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     <  1:1051218/133‑1 (MQ=255)

                                                                      cAAAAACCTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGaa                                                                     >  2:1051218/1‑133 (MQ=255)

                                                                       aaaaaCTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCtta                                                             <  2:219598/140‑1 (MQ=255)

                                                                            cTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACa                                                        <  1:1399809/140‑1 (MQ=255)

                                                                            cTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACa                                                        >  1:1602945/1‑140 (MQ=255)

                                                                               tGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    <  1:1101723/125‑1 (MQ=255)

                                                                               tGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAac                                                                    >  2:1101723/1‑125 (MQ=255)

                                                                               tGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCg                                                     >  1:532249/1‑140 (MQ=255)

                                                                               tGGTTCTGGCTGGACCTGG‑CTGGCGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCg                                                     >  2:2200133/1‑140 (MQ=255)

                                                                                ggTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGa                                                    <  1:441872/140‑1 (MQ=255)

                                                                                  ttCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACt                                                  <  1:203665/140‑1 (MQ=255)

                                                                                      ggctggACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCg                                              <  1:1771707/140‑1 (MQ=255)

                                                                                      ggctggACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCg                                              <  1:373282/140‑1 (MQ=255)

                                                                                      ggctggACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCg                                              >  1:1385327/1‑140 (MQ=255)

                                                                                       gctggACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGc                                             >  2:1702048/1‑140 (MQ=255)

                                                                                       gctggACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGc                                             >  2:1333324/1‑140 (MQ=255)

                                                                                           gACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATg                                         <  2:915846/140‑1 (MQ=255)

                                                                                            aCCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGc                                        <  2:1385327/140‑1 (MQ=255)

                                                                                            aCCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGc                                        >  1:54847/1‑140 (MQ=255)

                                                                                            aCCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGc                                        >  1:256919/1‑140 (MQ=255)

                                                                                            aCCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGc                                        >  1:208820/1‑140 (MQ=255)

                                                                                               tgg‑ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACg                                     >  2:276907/1‑140 (MQ=255)

                                                                                                gg‑ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGt                                    <  2:669254/140‑1 (MQ=255)

                                                                                                 g‑ctggTGAAAAACAGCGATGGCAAACTTGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTc                                   >  2:256298/1‑140 (MQ=255)

                                                                                                 g‑ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTc                                   >  2:448862/1‑140 (MQ=255)

                                                                                                 g‑ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTc                                   >  2:2059042/1‑140 (MQ=255)

                                                                                                 g‑ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTc                                   >  2:1990648/1‑140 (MQ=255)

                                                                                                   ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTcc                                  >  1:1713855/1‑140 (MQ=255)

                                                                                                   ctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTcc                                  <  2:532249/140‑1 (MQ=255)

                                                                                                      gTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTgg                               <  2:2371353/140‑1 (MQ=255)

                                                                                                      gTGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTgg                               <  2:1713855/140‑1 (MQ=255)

                                                                                                       tGAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGc                              >  2:840294/1‑140 (MQ=255)

                                                                                                        gAAAAACAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCt                             <  1:1333324/140‑1 (MQ=255)

                                                                                                           aaaCAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATc                          <  1:1702048/140‑1 (MQ=255)

                                                                                                             aCAGCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTg                        <  1:26727/140‑1 (MQ=255)

                                                                                                                gCGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAg                     <  2:913696/140‑1 (MQ=255)

                                                                                                                 cGATGGCAAACTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGc                    >  1:1180217/1‑140 (MQ=255)

                                                                                                                          aCTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTggg           <  2:545691/140‑1 (MQ=255)

                                                                                                                          aCTGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTggg           <  2:1602945/140‑1 (MQ=255)

                                                                                                                            tGGCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGgcg         <  2:668864/140‑1 (MQ=255)

                                                                                                                              gCTATCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCt       >  1:2012557/1‑140 (MQ=255)

                                                                                                                                 aTCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGt    >  2:1355837/1‑140 (MQ=255)

                                                                                                                                 aTCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGt    >  1:472979/1‑140 (MQ=255)

                                                                                                                                  tCGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTg   <  2:472979/140‑1 (MQ=255)

                                                                                                                                   cGTTCCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGa  <  1:1097818/140‑1 (MQ=255)

TCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGG‑CTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGA  >  NC_000913/1735655‑1735924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A