Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,797,729 A→T D72E (GAT→GAA)  pheT ← phenylalanine‑‑tRNA ligase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,797,7290AT98.9% 297.9 / NA 87D72E (GAT→GAA) pheTphenylalanine‑‑tRNA ligase subunit beta
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (38/48);  minor base C (1/0);  total (39/48)
Fisher's exact test for biased strand distribution p-value = 4.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCCCTTCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCC  >  NC_000913/1797593‑1797860
                                                                                                                                           |                                                                                                                                   
tCCCTTCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTcg                                                                                                                                  >  1:410739/1‑140 (MQ=255)
tCCCTTCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTcg                                                                                                                                  >  1:2052518/1‑140 (MQ=255)
 cccTTCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTcgc                                                                                                                                 >  2:529097/1‑140 (MQ=255)
     tCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCgccgcc                                                                                                                             <  1:1412382/140‑1 (MQ=255)
      cAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCGCCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGccgccg                                                                                                                            <  2:2331807/140‑1 (MQ=255)
        gACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGAc                                                                                                                          >  2:1425125/1‑140 (MQ=255)
        gACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGAc                                                                                                                          >  1:2333285/1‑140 (MQ=255)
        gACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGAc                                                                                                                          >  1:2005671/1‑140 (MQ=255)
         aCGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACa                                                                                                                         >  1:2391985/1‑140 (MQ=255)
          cGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACAt                                                                                                                        <  2:410739/140‑1 (MQ=255)
          cGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACAt                                                                                                                        <  2:2052518/140‑1 (MQ=255)
           ggTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACAtt                                                                                                                       <  1:1135870/140‑1 (MQ=255)
           ggTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACAtt                                                                                                                       >  2:362244/1‑140 (MQ=255)
           ggTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACAtt                                                                                                                       <  1:979265/140‑1 (MQ=255)
            gTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTc                                                                                                                      >  1:863844/1‑140 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCATGCCCTGACGGCAGTTTGGAGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCa                                                                                                                     <  2:2147668/140‑1 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGAc                                                                                                                          <  2:852782/135‑1 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGAc                                                                                                                          >  1:852782/1‑135 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCa                                                                                                                     >  1:1799587/1‑140 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCa                                                                                                                     >  2:539024/1‑140 (MQ=255)
             ttCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCa                                                                                                                     >  1:2162186/1‑140 (MQ=255)
              tCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCAc                                                                                                                    >  2:1357986/1‑140 (MQ=255)
               cGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCACAGCCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTc                                                                                                                      <  1:645901/140‑1 (MQ=255)
                gCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACtt                                                                                                                  <  1:1205000/140‑1 (MQ=255)
                       aGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcac                                                                                                           >  2:2221257/1‑140 (MQ=255)
                       aGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcac                                                                                                           <  1:1689602/140‑1 (MQ=255)
                        gTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcaca                                                                                                          <  1:1507402/140‑1 (MQ=255)
                        gTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcaca                                                                                                          <  2:2155246/140‑1 (MQ=255)
                        gTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcaca                                                                                                          <  2:878444/140‑1 (MQ=255)
                         tttCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCacac                                                                                                         >  1:297023/1‑140 (MQ=255)
                          ttCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACg                                                                                                        <  1:539024/140‑1 (MQ=255)
                          ttCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACg                                                                                                        <  2:2361344/140‑1 (MQ=255)
                              ccgcTTTAATTTTGAAATCACCCGGCAGAACAGCGCCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcaca                                                                                                          >  2:2132357/1‑134 (MQ=255)
                              ccgcTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTcaca                                                                                                          <  1:2132357/134‑1 (MQ=255)
                                   ttAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTc                                                                                               >  2:226650/1‑140 (MQ=255)
                                     aaTTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAg                                                                                             <  2:293296/140‑1 (MQ=255)
                                     aaTTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAg                                                                                             <  1:529097/140‑1 (MQ=255)
                                         ttGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGCTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGtt                                                                                         >  1:2089661/1‑140 (MQ=255)
                                               tCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGAtg                                                                                   <  1:1633847/140‑1 (MQ=255)
                                               tCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGAtg                                                                                   <  2:2005671/140‑1 (MQ=255)
                                                cACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGAtgc                                                                                  <  2:2162186/140‑1 (MQ=255)
                                                    cGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTgcg                                                                              <  1:1425125/140‑1 (MQ=255)
                                                    cGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTgcg                                                                              <  2:709351/140‑1 (MQ=255)
                                                    cGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTgcg                                                                              <  1:980913/140‑1 (MQ=255)
                                                      gCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGca                                                                            <  1:1623470/140‑1 (MQ=255)
                                                      gCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGca                                                                            <  1:362244/140‑1 (MQ=255)
                                                      gCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGca                                                                            <  1:28512/140‑1 (MQ=255)
                                                      gCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGca                                                                            <  2:1571656/140‑1 (MQ=255)
                                                          aaCAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACt                                                                        >  1:139656/1‑140 (MQ=255)
                                                             aGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTgcg                                                                              <  2:279120/131‑1 (MQ=255)
                                                             aGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTgcg                                                                              >  1:279120/1‑131 (MQ=255)
                                                              gCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAAc                                                                    <  2:1268723/140‑1 (MQ=255)
                                                              gCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAAc                                                                    <  1:1357986/140‑1 (MQ=255)
                                                              gCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAAc                                                                    <  2:909635/140‑1 (MQ=255)
                                                               cACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAAcc                                                                   >  1:2194835/1‑140 (MQ=255)
                                                                  cAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACt                                                                <  2:1799587/140‑1 (MQ=255)
                                                                    aTGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTc                                                              >  2:1054711/1‑140 (MQ=255)
                                                                     tGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCa                                                             >  1:199705/1‑140 (MQ=255)
                                                                       gTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCAcc                                                           >  1:1958052/1‑140 (MQ=255)
                                                                         cgctaccgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCaa                                                         >  1:1654037/1‑140 (MQ=255)
                                                                         cgctaccgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCaa                                                         >  2:274440/1‑140 (MQ=255)
                                                                             accgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGAc                                                     <  2:1330331/140‑1 (MQ=255)
                                                                             accgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGAc                                                     <  2:1057733/140‑1 (MQ=255)
                                                                             accgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGAc                                                     <  2:139656/140‑1 (MQ=255)
                                                                               cgctacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCa                                                   <  1:413277/140‑1 (MQ=255)
                                                                                  tacACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGc                                                >  1:1171550/1‑140 (MQ=255)
                                                                                    cacGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCg                                              >  2:2096305/1‑140 (MQ=255)
                                                                                        cAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGa                                          <  2:1171550/140‑1 (MQ=255)
                                                                                         aGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGaa                                         >  1:860525/1‑140 (MQ=255)
                                                                                           gCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGc                                       >  1:1801279/1‑140 (MQ=255)
                                                                                                gACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCg                                  >  1:421398/1‑140 (MQ=255)
                                                                                                 aCGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCgg                                 >  1:1727208/1‑140 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  2:484725/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  2:2333285/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  2:1801279/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  2:63011/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  1:2221257/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             >  1:1470134/1‑140 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  1:1054711/140‑1 (MQ=255)
                                                                                                     cAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTACACCAACGACCACGCCGTGGAAGCTGCCGGCAAc                             <  2:2135800/140‑1 (MQ=255)
                                                                                                      aGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAAcc                            >  1:1073928/1‑140 (MQ=255)
                                                                                                             cgcA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTa                     >  1:349370/1‑140 (MQ=255)
                                                                                                               cA‑‑‑CCGCAGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTaca                   <  1:2164002/140‑1 (MQ=255)
                                                                                                                        aGACGATGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACCCTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCa             <  2:1447799/140‑1 (MQ=255)
                                                                                                                              tGTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTcc       <  1:905851/140‑1 (MQ=255)
                                                                                                                               gTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCa      >  2:1461630/1‑140 (MQ=255)
                                                                                                                               gTCCAGCAGGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCa      >  2:788923/1‑140 (MQ=255)
                                                                                                                                   agcagGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCACCCGGTTCTACACCGTCAACTTCCAGGcc  <  2:421398/140‑1 (MQ=255)
                                                                                                                                    gcagGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGcc  >  2:273251/1‑139 (MQ=255)
                                                                                                                                    gcagGCGTTCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGcc  <  1:273251/139‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                   
TCCCTTCAGACGGTTCGCCACGCAGTTTCGCCGCTTTAATTTTGAAATCACCCGGCAGAACAGCACCAATGGTCGCTACCGCTACACGCAGGCCCTGACGGCAGTTTGGCGCA‑‑‑CCGCAGACGATGTCCAGCAGGCGATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCC  >  NC_000913/1797593‑1797860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A