Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,823,934	(C)_5→4	coding (420/888 nt)	cho →	endonuclease of nucleotide excision repair

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,823,930	0	C	.	100.0%	445.8 / NA	104	coding (416/888 nt)	cho	endonuclease of nucleotide excision repair
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (64/40); total (64/40)

Only 100 of 106 total aligned reads displayed.

TCCTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAGCCCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCGTTC  >  NC_000913/1823792‑1824065

tCCTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAGcc                                                                                                                                        <  2:353219/140‑1 (MQ=255)

    tGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAGccccaa                                                                                                                                    >  1:818168/1‑138 (MQ=255)

       aGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACAAG‑CCCCAACCt                                                                                                                                >  2:265445/1‑140 (MQ=255)

         cgcgATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGt                                                                                                                              >  1:1074462/1‑140 (MQ=255)

         cgcgATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGt                                                                                                                              >  1:2063178/1‑140 (MQ=255)

             aTTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTgg                                                                                                                          >  1:2191151/1‑140 (MQ=255)

              ttAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGc                                                                                                                         <  1:1422671/140‑1 (MQ=255)

              ttAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGc                                                                                                                         <  1:654428/140‑1 (MQ=255)

              ttAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGc                                                                                                                         <  1:929496/140‑1 (MQ=255)

                 aTCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTg                                                                                                                      >  1:816048/1‑140 (MQ=255)

                      aGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGc                                                                                                                 >  1:787348/1‑140 (MQ=255)

                        aacaacAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCa                                                                                                               >  2:622725/1‑140 (MQ=255)

                        aacaacAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCa                                                                                                               >  1:1365371/1‑140 (MQ=255)

                            acaGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAg                                                                                                           <  1:1170263/140‑1 (MQ=255)

                            acaGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAg                                                                                                           >  1:54111/1‑140 (MQ=255)

                               gCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGgcg                                                                                                        >  2:1003433/1‑140 (MQ=255)

                               gCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGgcg                                                                                                        <  1:1205421/140‑1 (MQ=255)

                                ccGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGgcgc                                                                                                       >  2:1124731/1‑140 (MQ=255)

                                  gCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGgcgcgc                                                                                                     >  2:746189/1‑140 (MQ=255)

                                  gCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGgcgcgc                                                                                                     >  2:726532/1‑140 (MQ=255)

                                   cTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCa                                                                                                    <  2:109008/140‑1 (MQ=255)

                                   cTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCa                                                                                                    <  1:494157/140‑1 (MQ=255)

                                          ataaACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGc                                                                                             >  1:1467274/1‑140 (MQ=255)

                                             aaCGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          <  2:2136348/140‑1 (MQ=255)

                                             aaCGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          <  2:54111/140‑1 (MQ=255)

                                             aaCGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACAAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          <  1:265445/140‑1 (MQ=255)

                                              aCGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGc                                                                                         >  1:1451013/1‑140 (MQ=255)

                                              aCGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGc                                                                                         >  1:627708/1‑140 (MQ=255)

                                                ggTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCAt                                                                                       >  1:1958594/1‑140 (MQ=255)

                                                ggTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCAt                                                                                       >  1:734313/1‑140 (MQ=255)

                                                ggTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCAt                                                                                       >  2:77326/1‑140 (MQ=255)

                                                  ttGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          >  2:147430/1‑135 (MQ=255)

                                                  ttGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          <  1:147430/135‑1 (MQ=255)

                                                  ttGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTg                                                                                     <  1:742779/140‑1 (MQ=255)

                                                  ttGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTg                                                                                     <  1:1021048/140‑1 (MQ=255)

                                                    gcgcCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          <  1:585984/133‑1 (MQ=255)

                                                    gcgcCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAg                                                                                          >  2:585984/1‑133 (MQ=255)

                                                    gcgcCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCa                                                                                   >  2:611233/1‑140 (MQ=255)

                                                    gcgcCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCa                                                                                   >  2:1197409/1‑140 (MQ=255)

                                                     cgccgcAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTg                                                                                     <  1:2354393/137‑1 (MQ=255)

                                                     cgccgcAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTg                                                                                     >  2:2354393/1‑137 (MQ=255)

                                                     cgccgcAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAg                                                                                  >  2:1738633/1‑140 (MQ=255)

                                                     cgccgcAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAg                                                                                  >  2:1456625/1‑140 (MQ=255)

                                                       ccgcAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGAc                                                                                <  2:2191151/140‑1 (MQ=255)

                                                            aTCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCg                                                                           <  1:1003433/140‑1 (MQ=255)

                                                                ccAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCtga                                                                       <  1:1554529/140‑1 (MQ=255)

                                                                ccAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCtga                                                                       <  1:1738633/140‑1 (MQ=255)

                                                                       tgtgCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACaa                                                                <  1:1878778/140‑1 (MQ=255)

                                                                         tgCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACaaaa                                                              >  1:432172/1‑140 (MQ=255)

                                                                          gCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACaaaaa                                                             <  2:432172/140‑1 (MQ=255)

                                                                            ccTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACt                                                           <  2:2385140/140‑1 (MQ=255)

                                                                            ccTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACt                                                           <  2:787348/140‑1 (MQ=255)

                                                                              tGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACttt                                                         >  1:1042859/1‑140 (MQ=255)

                                                                              tGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACttt                                                         >  2:2336534/1‑140 (MQ=255)

                                                                              tGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACttt                                                         >  1:2011256/1‑140 (MQ=255)

                                                                              tGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACttt                                                         >  1:2254942/1‑140 (MQ=255)

                                                                                   ttAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTAt                                                    >  1:773046/1‑140 (MQ=255)

                                                                                    tAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATg                                                   <  2:627708/140‑1 (MQ=255)

                                                                                           aaaGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCctgct                                            <  1:611233/140‑1 (MQ=255)

                                                                                             aGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTgg                                          >  2:1220171/1‑140 (MQ=255)

                                                                                             aGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTgg                                          >  2:1408781/1‑140 (MQ=255)

                                                                                               cgcgTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGa                                        <  2:1451013/140‑1 (MQ=255)

                                                                                               cgcgTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGa                                        >  1:726396/1‑140 (MQ=255)

                                                                                                 cgTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACt                                      >  1:1695153/1‑140 (MQ=255)

                                                                                                 cgTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACt                                      >  1:522285/1‑140 (MQ=255)

                                                                                                     gATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGaa                                  <  2:734313/140‑1 (MQ=255)

                                                                                                              tATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGt                         >  2:1523992/1‑140 (MQ=255)

                                                                                                              tATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGt                         >  2:1482037/1‑140 (MQ=255)

                                                                                                              tATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGt                         >  2:1924969/1‑140 (MQ=255)

                                                                                                              tATGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGt                         >  1:1719906/1‑140 (MQ=255)

                                                                                                                tGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGTCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       >  2:268244/1‑140 (MQ=255)

                                                                                                                tGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       <  1:726532/140‑1 (MQ=255)

                                                                                                                tGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       <  2:422693/140‑1 (MQ=255)

                                                                                                                tGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       <  1:695526/140‑1 (MQ=255)

                                                                                                                tGCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       <  2:1042859/140‑1 (MQ=255)

                                                                                                                 gCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcgc                      >  1:847631/1‑140 (MQ=255)

                                                                                                                 gCCAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcgc                      >  2:1129802/1‑140 (MQ=255)

                                                                                                                   cAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCgg                    <  2:2254942/140‑1 (MQ=255)

                                                                                                                   cAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCgg                    >  2:1670419/1‑140 (MQ=255)

                                                                                                                   cAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCgg                    >  2:321447/1‑140 (MQ=255)

                                                                                                                   cAAAGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCgg                    >  1:1455692/1‑140 (MQ=255)

                                                                                                                     aaGAGGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTc                  <  2:847631/140‑1 (MQ=255)

                                                                                                                      agagGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       >  2:431052/1‑134 (MQ=255)

                                                                                                                      agagGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTcg                       <  1:431052/134‑1 (MQ=255)

                                                                                                                      agagGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCg                 >  1:1210062/1‑140 (MQ=255)

                                                                                                                      agagGTGGATTTTTCACGAG‑CCCCAACCTGCTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCg                 >  1:628803/1‑140 (MQ=255)

                                                                                                                        agGTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTg               >  2:2097156/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             >  2:2199368/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             <  2:818168/140‑1 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             >  1:1626216/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             >  1:1636430/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             >  1:2319547/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCa             >  2:158776/1‑140 (MQ=255)

                                                                                                                          gTGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAAC‑AAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCAt            >  1:750443/1‑140 (MQ=255)

                                                                                                                           tGGATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCAt            >  1:1611193/1‑140 (MQ=255)

                                                                                                                             gATTTTTCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGt          >  1:727678/1‑140 (MQ=255)

                                                                                                                                  ttCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCg     >  2:860104/1‑140 (MQ=255)

                                                                                                                                   tCACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAAC‑AAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCGtt   <  2:750443/140‑1 (MQ=255)

                                                                                                                                    cACGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCGtt   <  2:1455692/140‑1 (MQ=255)

                                                                                                                                     aCGAG‑CCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCGTTc  <  2:264254/140‑1 (MQ=255)

TCCTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTTGCGCCGCAATCGCCAGCTCTGTGCCCTGCAATTAAATGAAAAGCGCGTCGATGTGGTGTATGCCAAAGAGGTGGATTTTTCACGAGCCCCCAACCTGTTTGGCCTGTTTGCCAATAGGCGCGCAGCTTTGCAAGCATTGCAGACCATCGCTGATGAACAAAAACTTTGTTATGGCCTGCTGGGACTGGAACCGTTAAGTCGCGGTCGTGCATGTTTTCGTTC  >  NC_000913/1823792‑1824065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A