Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,858,333	T→C	K167K (AAA→AAG)	ydjJ ←	putative zinc‑binding dehydrogenase YdjJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,858,333	0	T	C	100.0%	331.1 / NA	92	K167K (AAA→AAG)	ydjJ	putative zinc‑binding dehydrogenase YdjJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/48); total (44/48)

AGCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGTTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATGCGCCG  >  NC_000913/1858199‑1858468

aGCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAAc                                                                                                                                    >  2:2211044/1‑140 (MQ=255)

 gCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACa                                                                                                                                   <  2:993303/140‑1 (MQ=255)

 gCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACa                                                                                                                                   <  2:1699469/140‑1 (MQ=255)

 gCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACa                                                                                                                                   <  1:1187121/140‑1 (MQ=255)

  cTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACAt                                                                                                                                  >  2:194943/1‑140 (MQ=255)

    gTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCt                                                                                                                                >  2:1115664/1‑140 (MQ=255)

     ttCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTg                                                                                                                               >  2:1159058/1‑140 (MQ=255)

         gCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAg                                                                                                                           <  2:1779299/140‑1 (MQ=255)

              tGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAGTTATCTTCTTACCCGGCTTAACATCTGCCAGCATcg                                                                                                                      <  1:332939/140‑1 (MQ=255)

               gCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATcgc                                                                                                                     >  1:2156660/1‑140 (MQ=255)

               gCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATcgc                                                                                                                     >  1:2307826/1‑140 (MQ=255)

               gCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATcgc                                                                                                                     <  2:568744/140‑1 (MQ=255)

                  aGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGgc                                                                                                                  >  2:1796906/1‑140 (MQ=255)

                   gACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGgca                                                                                                                 <  2:1201839/140‑1 (MQ=255)

                   gACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGgca                                                                                                                 <  2:2307826/140‑1 (MQ=255)

                   gACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAAACAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGgca                                                                                                                 <  1:1767234/140‑1 (MQ=255)

                             cAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGa                                                                                                       <  1:1310576/140‑1 (MQ=255)

                                cacaTCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTg                                                                                                    >  1:1794050/1‑140 (MQ=255)

                                   aTCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCT‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCgg                                                                                                 <  1:438159/140‑1 (MQ=255)

                                   aTCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCgg                                                                                                 <  2:2191111/140‑1 (MQ=255)

                                     cAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCa                                                                                               <  1:1159058/140‑1 (MQ=255)

                                       acgacgGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAgg                                                                                             >  1:1269505/1‑140 (MQ=255)

                                          acgGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTc                                                                                          <  1:479525/140‑1 (MQ=255)

                                             gCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTccac                                                                                       >  2:1951644/1‑140 (MQ=255)

                                              cAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑ATAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTccacc                                                                                      <  2:1490289/140‑1 (MQ=255)

                                              cAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTccacc                                                                                      >  2:345353/1‑140 (MQ=255)

                                                aTTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCgg                                                                                                 >  2:1071704/1‑127 (MQ=255)

                                                aTTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCgg                                                                                                 <  1:1071704/127‑1 (MQ=255)

                                                aTTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAg                                                                                    <  2:2372697/140‑1 (MQ=255)

                                                 tttCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgc                                                                                   <  1:1060185/140‑1 (MQ=255)

                                                   tCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 <  1:1209111/140‑1 (MQ=255)

                                                   tCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 <  2:220763/140‑1 (MQ=255)

                                                   tCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 <  1:345353/140‑1 (MQ=255)

                                                   tCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 <  1:1796906/140‑1 (MQ=255)

                                                       ttGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 >  2:559117/1‑136 (MQ=255)

                                                       ttGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAgcgc                                                                                 <  1:559117/136‑1 (MQ=255)

                                                       ttGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCt                                                                             >  1:1020890/1‑140 (MQ=255)

                                                          cTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTcc                                                                          >  1:2297907/1‑140 (MQ=255)

                                                          cTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTcc                                                                          <  2:1794050/140‑1 (MQ=255)

                                                           tCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCa                                                                         <  2:1269505/140‑1 (MQ=255)

                                                            cccAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCAt                                                                        <  1:2211044/140‑1 (MQ=255)

                                                            cccAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCAt                                                                        >  2:90835/1‑140 (MQ=255)

                                                            cccAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCAt                                                                        <  1:1115664/140‑1 (MQ=255)

                                                            cccAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCAt                                                                        >  2:1706577/1‑140 (MQ=255)

                                                            cccAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCAt                                                                        <  1:194943/140‑1 (MQ=255)

                                                               aGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCgt                                                                     <  2:200567/140‑1 (MQ=255)

                                                                      tGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCata                                                              >  1:121717/1‑140 (MQ=255)

                                                                           gCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTc                                                         >  1:1911477/1‑140 (MQ=255)

                                                                            cTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCg                                                        <  2:240524/140‑1 (MQ=255)

                                                                              tGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCggg                                                      <  2:85382/140‑1 (MQ=255)

                                                                              tGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCggg                                                      <  1:183190/140‑1 (MQ=255)

                                                                               gCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGc                                                     <  2:1105473/140‑1 (MQ=255)

                                                                               gCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGCCGGGc                                                     >  2:1160491/1‑140 (MQ=255)

                                                                                     tcatcaAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTg                                               >  1:1249692/1‑140 (MQ=255)

                                                                                       atcaAACCAATACAACCTGCTCCCAGAGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTg                                               >  1:1645696/1‑140 (MQ=255)

                                                                                                aTACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGct                                    >  2:329170/1‑140 (MQ=255)

                                                                                                aTACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGct                                    >  2:885173/1‑140 (MQ=255)

                                                                                                aTACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGct                                    <  2:924641/140‑1 (MQ=255)

                                                                                                aTACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGct                                    <  1:1951644/140‑1 (MQ=255)

                                                                                                 tACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGctc                                   >  1:1893641/1‑140 (MQ=255)

                                                                                                      ccTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGttt                                                <  2:588923/122‑1 (MQ=255)

                                                                                                      ccTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGttt                                                >  1:588923/1‑122 (MQ=255)

                                                                                                      ccTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCgg                              >  2:543276/1‑140 (MQ=255)

                                                                                                      ccTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCgg                              <  2:390705/140‑1 (MQ=255)

                                                                                                      ccTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCgg                              >  1:1378580/1‑140 (MQ=255)

                                                                                                       cTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGa                             >  1:1374695/1‑140 (MQ=255)

                                                                                                        tGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGAt                            <  2:1911477/140‑1 (MQ=255)

                                                                                                        tGCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGAt                            <  1:329170/140‑1 (MQ=255)

                                                                                                         gCTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATg                           >  1:1831660/1‑140 (MQ=255)

                                                                                                          cTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGa                          >  1:1784874/1‑140 (MQ=255)

                                                                                                          cTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGa                          >  2:2356673/1‑140 (MQ=255)

                                                                                                          cTCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGa                          <  1:1706577/140‑1 (MQ=255)

                                                                                                           tCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGctct                                  <  2:2330113/131‑1 (MQ=255)

                                                                                                           tCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGctct                                  >  1:2330113/1‑131 (MQ=255)

                                                                                                           tCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGac                         >  1:2260629/1‑140 (MQ=255)

                                                                                                           tCCC‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCACCGGATGac                         >  2:2305828/1‑140 (MQ=255)

                                                                                                              c‑‑AGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGAcaca                      >  2:507508/1‑140 (MQ=255)

                                                                                                                 aGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGAt                            <  2:1365890/133‑1 (MQ=255)

                                                                                                                 aGAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGAt                            >  1:1365890/1‑133 (MQ=255)

                                                                                                                  gAATAATTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGa                    >  2:2241612/1‑140 (MQ=255)

                                                                                                                    ataatTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGCCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATa                  <  1:1160491/140‑1 (MQ=255)

                                                                                                                     taatTATCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAg                 <  1:504422/140‑1 (MQ=255)

                                                                                                                          aTCTTCTTACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGt            >  2:1132710/1‑140 (MQ=255)

                                                                                                                            cttcttACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTa          <  2:1378580/140‑1 (MQ=255)

                                                                                                                             ttcttACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTaa         >  1:2108952/1‑140 (MQ=255)

                                                                                                                             ttcttACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTaa         >  1:598568/1‑140 (MQ=255)

                                                                                                                               cttACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATg       <  1:2356673/140‑1 (MQ=255)

                                                                                                                                 tACCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATgcg     >  1:736831/1‑140 (MQ=255)

                                                                                                                                  aCCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATgcgc    >  2:645955/1‑140 (MQ=255)

                                                                                                                                  aCCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATgcgc    >  1:1352708/1‑140 (MQ=255)

                                                                                                                                  aCCCGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATgcgc    <  2:1242055/140‑1 (MQ=255)

                                                                                                                                    ccGGCTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATGcgccg  <  1:1132710/140‑1 (MQ=255)

AGCTGTTCCGCCATTGCCAGACGTTTTTCCAGCACATCAACGACGGCAATTTCCGTTGCTCCCAGGCATTTGCACGCTTGCAACGTCATCAAACCAATACAACCTGCTCCC‑‑AGAATAATTATCTTCTTACCCGGTTTAACATCTGCCAGCATCGCGGCATGCATCCCGACTGCGGCAGGCTCCACCAGCGCCCCTTCCATCGTGTCCATATTGTCGGGCAGTTTGTAAGTAAAGCTCTCCGGATGACACAGATAGTGCGTTAATGCGCCG  >  NC_000913/1858199‑1858468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A