Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,868,282 T→C F459L (TTC→CTC)  yeaG → protein kinase YeaG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,868,2820TC100.0% 427.7 / NA 117F459L (TTC→CTC) yeaGprotein kinase YeaG
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (60/57);  total (60/57)

Only 100 of 122 total aligned reads displayed.

GATGAACGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGA  >  NC_000913/1868152‑1868418
                                                                                                                                  |                                                                                                                                        
gATGAACGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAag                                                                                                                                 >  2:650215/1‑140 (MQ=255)
   gAACGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgc                                                                                                                              <  2:556292/140‑1 (MQ=255)
    aaCGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgca                                                                                                                             >  2:133701/1‑140 (MQ=255)
      cGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcagg                                                                                                                           <  1:962178/140‑1 (MQ=255)
        gTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggca                                                                                                                         <  2:296604/140‑1 (MQ=255)
        gTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggca                                                                                                                         <  1:1438356/140‑1 (MQ=255)
        gTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggca                                                                                                                         <  2:1470898/140‑1 (MQ=255)
         tCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggcag                                                                                                                        >  1:39482/1‑140 (MQ=255)
         tCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggcag                                                                                                                        >  2:1321253/1‑140 (MQ=255)
         tCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAgcaggcag                                                                                                                        >  2:13331/1‑140 (MQ=255)
           tGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGaa                                                                                                                      <  2:257493/140‑1 (MQ=255)
           tGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGaa                                                                                                                      >  2:1588836/1‑140 (MQ=255)
            gTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAAc                                                                                                                     <  1:13331/140‑1 (MQ=255)
            gTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAAc                                                                                                                     <  1:1321253/140‑1 (MQ=255)
             tCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACg                                                                                                                    <  2:1971105/140‑1 (MQ=255)
             tCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACg                                                                                                                    <  2:1088358/140‑1 (MQ=255)
               gACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCt                                                                                                                  <  2:866/140‑1 (MQ=255)
                aCGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAAc                                                                                                                     <  1:2036736/136‑1 (MQ=255)
                   cgTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCt                                                                                                              >  2:355526/1‑140 (MQ=255)
                   cgTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCt                                                                                                              >  2:960472/1‑140 (MQ=255)
                    gTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTg                                                                                                             <  1:1655224/140‑1 (MQ=255)
                     ttttGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTgg                                                                                                            >  2:742719/1‑140 (MQ=255)
                       ttGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTgg                                                                                                            <  2:1230008/138‑1 (MQ=255)
                       ttGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAg                                                                                                          <  1:586673/140‑1 (MQ=255)
                          cGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTc                                                                                                       <  2:295926/140‑1 (MQ=255)
                            tttAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCt                                                                                                     <  2:905574/140‑1 (MQ=255)
                            tttAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCt                                                                                                     <  1:627996/140‑1 (MQ=255)
                             ttAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTg                                                                                                    <  2:952612/140‑1 (MQ=255)
                              tAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGa                                                                                                   <  1:1820021/140‑1 (MQ=255)
                               aaGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGaa                                                                                                  <  1:1540954/140‑1 (MQ=255)
                               aaGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGaa                                                                                                  <  2:946936/140‑1 (MQ=255)
                                    ccTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGtt                                                                                             >  1:1826410/1‑140 (MQ=255)
                                      tctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTAt                                                                                           <  1:2303950/140‑1 (MQ=255)
                                      tctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTAt                                                                                           <  1:650215/140‑1 (MQ=255)
                                       ctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGaa                                                                                                  >  1:1875963/1‑132 (MQ=255)
                                       ctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGaa                                                                                                  <  2:1875963/132‑1 (MQ=255)
                                       ctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATc                                                                                          >  2:1632346/1‑140 (MQ=255)
                                       ctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATc                                                                                          <  1:861997/140‑1 (MQ=255)
                                       ctcCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATc                                                                                          >  1:1212619/1‑140 (MQ=255)
                                         cccGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTAt                                                                                           <  2:1520524/137‑1 (MQ=255)
                                         cccGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTg                                                                                        >  1:2198552/1‑140 (MQ=255)
                                         cccGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTg                                                                                        >  2:1402730/1‑140 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGa                                                                                                   <  2:1697858/125‑1 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGa                                                                                                   >  2:1541505/1‑125 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGa                                                                                                   <  1:1541505/125‑1 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGa                                                                                                   >  1:1697858/1‑125 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATcc                                                                                    >  2:1908131/1‑140 (MQ=255)
                                             cgTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATcc                                                                                    <  1:205903/140‑1 (MQ=255)
                                               tgtTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCg                                                                                  >  1:24611/1‑140 (MQ=255)
                                                         cGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCg                                                                        >  2:31488/1‑140 (MQ=255)
                                                           aTCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGa                                                                                       <  1:2296312/123‑1 (MQ=255)
                                                           aTCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGa                                                                                       >  2:2296312/1‑123 (MQ=255)
                                                                   gAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCgg                                                              <  1:1703348/140‑1 (MQ=255)
                                                                   gAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCgg                                                              <  1:1632346/140‑1 (MQ=255)
                                                                       tGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCaaa                                                          <  2:1607074/140‑1 (MQ=255)
                                                                        ggCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAag                                                         >  2:1191867/1‑140 (MQ=255)
                                                                         gcagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAaga                                                        >  1:783387/1‑140 (MQ=255)
                                                                         gcagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAaga                                                        >  1:401093/1‑140 (MQ=255)
                                                                         gcagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAaga                                                        >  1:404499/1‑140 (MQ=255)
                                                                         gcagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAaga                                                        >  1:456772/1‑140 (MQ=255)
                                                                          cagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAagag                                                       >  1:1220002/1‑140 (MQ=255)
                                                                          cagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAagag                                                       <  1:1572360/140‑1 (MQ=255)
                                                                          cagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAagag                                                       >  1:655305/1‑140 (MQ=255)
                                                                          cagcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAagag                                                       >  2:600754/1‑140 (MQ=255)
                                                                           agcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGTAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTAt                                                                 >  1:611124/1‑129 (MQ=255)
                                                                           agcaAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGTAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTAt                                                                 <  2:611124/129‑1 (MQ=255)
                                                                                aCCCGGTCCATCTGTTCTACGTCCTGAAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAg                                                 <  1:106910/140‑1 (MQ=255)
                                                                                      tCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGcc                                           <  2:39482/140‑1 (MQ=255)
                                                                                      tCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGcc                                           <  2:197907/140‑1 (MQ=255)
                                                                                          tCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATcc                                                   <  2:830566/128‑1 (MQ=255)
                                                                                          tCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATcc                                                   >  1:830566/1‑128 (MQ=255)
                                                                                          tCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTAcc                                       >  2:493332/1‑140 (MQ=255)
                                                                                          tCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTAcc                                       >  1:482670/1‑140 (MQ=255)
                                                                                            tGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGa                                                <  2:587392/129‑1 (MQ=255)
                                                                                            tGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGa                                                >  1:587392/1‑129 (MQ=255)
                                                                                             gTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTg                                    <  2:751278/140‑1 (MQ=255)
                                                                                                cTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAAt                                 >  1:2196260/1‑140 (MQ=255)
                                                                                                 tACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATc                                <  2:2205463/140‑1 (MQ=255)
                                                                                                 tACGTCCTGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATc                                <  2:1130193/140‑1 (MQ=255)
                                                                                                        tGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTcc                         >  1:630544/1‑140 (MQ=255)
                                                                                                        tGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTcc                         >  2:625184/1‑140 (MQ=255)
                                                                                                        tGGAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTcc                         >  2:2229424/1‑140 (MQ=255)
                                                                                                          gAACAGCAGATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGa                       >  2:445345/1‑140 (MQ=255)
                                                                                                             cagcagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAata                    >  1:1551618/1‑140 (MQ=255)
                                                                                                               gcagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATc                                >  2:2078327/1‑126 (MQ=255)
                                                                                                               gcagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATc                                <  1:2078327/126‑1 (MQ=255)
                                                                                                               gcagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTAATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATg                  >  2:15025/1‑140 (MQ=255)
                                                                                                                cagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg                 >  1:1177955/1‑140 (MQ=255)
                                                                                                                cagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg                 >  2:224893/1‑140 (MQ=255)
                                                                                                                cagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg                 >  1:1152546/1‑140 (MQ=255)
                                                                                                                cagATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg                 >  1:296954/1‑140 (MQ=255)
                                                                                                                 agATTGAGCGCGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATggg                >  1:614035/1‑140 (MQ=255)
                                                                                                                        gcgcGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATggg                <  1:1307990/133‑1 (MQ=255)
                                                                                                                        gcgcGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATggg                >  2:1307990/1‑133 (MQ=255)
                                                                                                                        gcgcGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACa         >  1:161451/1‑140 (MQ=255)
                                                                                                                        gcgcGAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCAGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACa         <  1:742719/140‑1 (MQ=255)
                                                                                                                         cgcgAGCAGCTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAt        >  1:826398/1‑140 (MQ=255)
                                                                                                                             agcagcTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc    <  1:1404337/140‑1 (MQ=255)
                                                                                                                             agcagcTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc    >  2:1600723/1‑140 (MQ=255)
                                                                                                                             agcagcTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc    <  1:1908131/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                        
GATGAACGGTCTGTCGACGCGTTTTGCGTTTAAGATCCTCTCCCGCGTGTTCAACTTCGATCATGTAGAAGTGGCAGCAAACCCGGTCCATCTGTTCTACGTCCTGGAACAGCAGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGA  >  NC_000913/1868152‑1868418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A