Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,892,288	T→C	E316E (GAA→GAG)	yoaA ←	putative 5' to 3' DNA helicase implicated in DNA repair

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,892,288	0	T	C	98.2%	385.6 / ‑2.7	110	E316E (GAA→GAG)	yoaA	putative 5' to 3' DNA helicase implicated in DNA repair
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (52/56); total (53/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01

Only 100 of 111 total aligned reads displayed.

GTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGCAAGACGATCAGCGC  >  NC_000913/1892153‑1892424

gTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACGGTTTCGCCACGTCATAACAAAGCTCCa                                                                                                                                      <  2:2183443/140‑1 (MQ=255)

     aGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGgtg                                                                                                                                 >  2:927584/1‑140 (MQ=255)

     aGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGgtg                                                                                                                                 >  2:713610/1‑140 (MQ=255)

      gTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGgtgt                                                                                                                                >  1:1902548/1‑140 (MQ=255)

        aGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCa                                                                                                                              >  1:1601874/1‑140 (MQ=255)

          cTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATc                                                                                                                            >  2:516583/1‑140 (MQ=255)

           tGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           >  2:238801/1‑140 (MQ=255)

           tGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  1:238801/140‑1 (MQ=255)

           tGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  2:2192214/140‑1 (MQ=255)

           tGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCAACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  2:1749715/140‑1 (MQ=255)

            gTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGa                                                                                                                          >  2:1780341/1‑140 (MQ=255)

             tAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAg                                                                                                                         <  2:504824/140‑1 (MQ=255)

              aGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGc                                                                                                                        >  1:452771/1‑140 (MQ=255)

              aGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGc                                                                                                                        >  2:1400801/1‑140 (MQ=255)

              aGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGc                                                                                                                        >  2:547065/1‑140 (MQ=255)

                 ccGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  1:2241711/134‑1 (MQ=255)

                 ccGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           >  2:2241711/1‑134 (MQ=255)

                  cGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTa                                                                                                                    >  2:1990614/1‑140 (MQ=255)

                   ggCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           >  2:9717/1‑132 (MQ=255)

                   ggCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  1:9717/132‑1 (MQ=255)

                    gCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGGGTGTCATCGAGCAGTaaa                                                                                                                  >  2:2401172/1‑140 (MQ=255)

                    gCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           >  1:1711305/1‑131 (MQ=255)

                    gCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCg                                                                                                                           <  2:1711305/131‑1 (MQ=255)

                    gCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTaaa                                                                                                                  >  2:441152/1‑140 (MQ=255)

                     cTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTaaaa                                                                                                                 <  2:142066/140‑1 (MQ=255)

                        attgatCTCTTTTATCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATg                                                                                                              <  2:124081/140‑1 (MQ=255)

                             tctcTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGc                                                                                                         <  1:714978/140‑1 (MQ=255)

                                  tttAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGc                                                                                                         <  2:812054/135‑1 (MQ=255)

                                  tttAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGc                                                                                                         >  1:812054/1‑135 (MQ=255)

                                     aGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTg                                                                                                 <  1:1415068/140‑1 (MQ=255)

                                      gCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGc                                                                                                >  2:1605422/1‑140 (MQ=255)

                                      gCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGc                                                                                                >  2:347167/1‑140 (MQ=255)

                                      gCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGc                                                                                                >  2:472853/1‑140 (MQ=255)

                                      gCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGc                                                                                                >  2:487166/1‑140 (MQ=255)

                                      gCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGc                                                                                                >  1:1177082/1‑140 (MQ=255)

                                       ccGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCg                                                                                               <  1:1815541/140‑1 (MQ=255)

                                       ccGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCg                                                                                               <  1:713610/140‑1 (MQ=255)

                                        cGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCgg                                                                                              >  1:2291970/1‑140 (MQ=255)

                                         gCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGa                                                                                             <  1:1114364/140‑1 (MQ=255)

                                           ttCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGAtt                                                                                           >  1:481980/1‑140 (MQ=255)

                                               gCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCt                                                                                       <  1:1246856/140‑1 (MQ=255)

                                                ccGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTa                                                                                      <  1:472853/140‑1 (MQ=255)

                                                ccGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTa                                                                                      <  1:487166/140‑1 (MQ=255)

                                                 cGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTaa                                                                                     <  2:759180/140‑1 (MQ=255)

                                                  gtgtGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAAc                                                                                    <  1:1990614/140‑1 (MQ=255)

                                                     tgCGATACAACGTGGCGCGCTCAAATGCCGCGTCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGc                                                                                 >  2:614647/1‑140 (MQ=255)

                                                     tgCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGc                                                                                 >  2:1306147/1‑140 (MQ=255)

                                                     tgCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGc                                                                                 >  2:1688931/1‑140 (MQ=255)

                                                     tgCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGc                                                                                 <  1:695528/140‑1 (MQ=255)

                                                     tgCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGc                                                                                 >  1:2186066/1‑140 (MQ=255)

                                                         aTACAACGTGGCGCGCCCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCCCGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCCGATTagctaacagctaac                                                                             <  2:2409731/140‑1 (MQ=255)

                                                           aCAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGc                                                                           >  1:1124538/1‑140 (MQ=255)

                                                           aCAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGc                                                                           >  1:275711/1‑140 (MQ=255)

                                                             aaCGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAg                                                                         <  2:1902548/140‑1 (MQ=255)

                                                              aCGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCT‑CAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGt                                                                       <  2:1731125/140‑1 (MQ=255)

                                                               cGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCa                                                                          >  2:364229/1‑137 (MQ=255)

                                                               cGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCa                                                                          <  1:364229/137‑1 (MQ=255)

                                                               cGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGt                                                                       >  1:394350/1‑140 (MQ=255)

                                                               cGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGt                                                                       >  2:1035673/1‑140 (MQ=255)

                                                                   gcgcgcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTAcc                                                                   <  2:2293865/140‑1 (MQ=255)

                                                                    cgcgcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACcg                                                                  >  1:1793434/1‑140 (MQ=255)

                                                                    cgcgcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACcg                                                                  >  1:2300497/1‑140 (MQ=255)

                                                                    cgcgcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACcg                                                                  >  2:458995/1‑140 (MQ=255)

                                                                      cgcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACcgcg                                                                >  2:851877/1‑140 (MQ=255)

                                                                       gcTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGa                                                               <  2:452771/140‑1 (MQ=255)

                                                                             aTGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCt                                                         <  1:1780341/140‑1 (MQ=255)

                                                                                ccGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCCGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGc                                                      <  2:2118073/140‑1 (MQ=255)

                                                                                 cGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATa                                                             >  1:1478028/1‑132 (MQ=255)

                                                                                   cATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCa                                                   <  2:378375/140‑1 (MQ=255)

                                                                                        aGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAg                                              >  1:381245/1‑140 (MQ=255)

                                                                                          cAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGtt                                            >  2:2377392/1‑140 (MQ=255)

                                                                                             ggCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCa                                         <  1:1286333/140‑1 (MQ=255)

                                                                                                 gAACGCCCCAGTGACGGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACg                                     >  2:67901/1‑140 (MQ=255)

                                                                                                  aaCGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGa                                    >  1:1790662/1‑140 (MQ=255)

                                                                                                  aaCGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGa                                    >  1:1266562/1‑140 (MQ=255)

                                                                                                  aaCGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGa                                    <  2:1790662/140‑1 (MQ=255)

                                                                                                  aaCGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGa                                    >  2:1261369/1‑140 (MQ=255)

                                                                                                            tGACGGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgcg                          <  1:67901/140‑1 (MQ=255)

                                                                                                            tGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTTATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgcg                          <  1:214307/140‑1 (MQ=255)

                                                                                                            tGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgcg                          <  1:347167/140‑1 (MQ=255)

                                                                                                            tGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgcg                          <  2:1266562/140‑1 (MQ=255)

                                                                                                            tGACAGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgcg                          <  1:580774/140‑1 (MQ=255)

                                                                                                                aGTTTCGCCACGTCATACCAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGTGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCAct                      <  2:2144195/140‑1 (MQ=255)

                                                                                                                aGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCAct                      <  1:2377392/140‑1 (MQ=255)

                                                                                                                aGTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCAct                      <  2:463294/140‑1 (MQ=255)

                                                                                                                 gTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAAt                                >  2:227046/1‑129 (MQ=255)

                                                                                                                 gTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAAt                                <  1:227046/129‑1 (MQ=255)

                                                                                                                 gTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgc                           >  1:652132/1‑134 (MQ=255)

                                                                                                                 gTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTgc                           <  2:652132/134‑1 (MQ=255)

                                                                                                                 gTTTCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCActc                     >  2:1347317/1‑140 (MQ=255)

                                                                                                                    tCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTgg                  <  1:851877/140‑1 (MQ=255)

                                                                                                                    tCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTgg                  >  2:1699421/1‑140 (MQ=255)

                                                                                                                    tCGCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTgg                  <  1:1808936/140‑1 (MQ=255)

                                                                                                                      gCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGc                <  2:1177082/140‑1 (MQ=255)

                                                                                                                      gCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGc                <  2:1492897/140‑1 (MQ=255)

                                                                                                                      gCCACGTCATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGc                >  2:25205/1‑140 (MQ=255)

                                                                                                                             cATAACAAAGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGCAAGACGa         >  2:2121529/1‑140 (MQ=255)

                                                                                                                                   aaaGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGCAAGACGATCAgcg   <  1:1699421/140‑1 (MQ=255)

                                                                                                                                    aaGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGCAAGACGATCAgcgc  <  1:2121529/140‑1 (MQ=255)

                                                                                                                                    aaGCTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGACAAGACGATCAgcgc  <  1:1336816/140‑1 (MQ=255)

GTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGGGTGTCATCGAGCAGTAAAAATGCCCGCTGAATTTGCGGATTAGCTAACAGCTCACGCAGGTTACCGCGATAACCTGGCTCACCGAGTTGCAGACGAAAATCCTGCGCACTCTGGGCAAGACGATCAGCGC  >  NC_000913/1892153‑1892424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A