Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,899,034	T→C	V203A (GTA→GCA)	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,899,034	0	T	C	100.0%	324.4 / NA	90	V203A (GTA→GCA)	pdeD	putative c‑di‑GMP phosphodiesterase PdeD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/46); total (44/46)

AGTAGCAATGCTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGTAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTGGCG  >  NC_000913/1898898‑1899170

aGTAGCAATGCTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGa                                                                                                                                       <  1:1534441/140‑1 (MQ=255)

  tAGCAATGCTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGAtt                                                                                                                                     >  2:579268/1‑140 (MQ=255)

          cTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCg                                                                                                                             <  1:852805/140‑1 (MQ=255)

          cTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCg                                                                                                                             >  1:624622/1‑140 (MQ=255)

          cTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCg                                                                                                                             >  1:1454475/1‑140 (MQ=255)

           tGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGc                                                                                                                            <  1:249215/140‑1 (MQ=255)

           tGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGc                                                                                                                            <  2:1090483/140‑1 (MQ=255)

           tGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGc                                                                                                                            <  1:593048/140‑1 (MQ=255)

           tGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGc                                                                                                                            <  2:362764/140‑1 (MQ=255)

               gTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAAcc                                                                                                                        >  1:1887130/1‑140 (MQ=255)

                tCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCt                                                                                                                       <  1:1699600/140‑1 (MQ=255)

                  aTGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGa                                                                                                                     >  2:1669062/1‑140 (MQ=255)

                  aTGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGa                                                                                                                     >  2:327489/1‑140 (MQ=255)

                   tGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGaa                                                                                                                    >  2:2325066/1‑140 (MQ=255)

                    ggAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAg                                                                                                                   <  2:103744/140‑1 (MQ=255)

                          gatTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGGCGGTGGACAAACGCCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATg                                                                                                             >  1:2218515/1‑140 (MQ=255)

                          gatTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATg                                                                                                             >  1:514061/1‑140 (MQ=255)

                          gatTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATg                                                                                                             >  1:1802346/1‑140 (MQ=255)

                            ttAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGaa                                                                                                           <  2:1454475/140‑1 (MQ=255)

                              aaCATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGaaaa                                                                                                         >  1:192820/1‑140 (MQ=255)

                                cATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAg                                                                                                                   <  1:2334193/128‑1 (MQ=255)

                                cATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAg                                                                                                                   >  2:2334193/1‑128 (MQ=255)

                                cATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACt                                                                                                       >  2:163438/1‑140 (MQ=255)

                                 aTCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTa                                                                                                      >  2:783584/1‑140 (MQ=255)

                                 aTCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTa                                                                                                      >  1:2218356/1‑140 (MQ=255)

                                  tCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTAt                                                                                                     >  2:917048/1‑140 (MQ=255)

                                    gACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCa                                                                                                   <  2:880676/140‑1 (MQ=255)

                                     aCTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAg                                                                                                  >  1:1788755/1‑140 (MQ=255)

                                     aCTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAg                                                                                                  >  1:1784711/1‑140 (MQ=255)

                                     aCTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAg                                                                                                  >  1:1739895/1‑140 (MQ=255)

                                     aCTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAg                                                                                                  >  2:924558/1‑140 (MQ=255)

                                      cTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAgg                                                                                                 <  1:327489/140‑1 (MQ=255)

                                       ttACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGt                                                                                                <  2:1802346/140‑1 (MQ=255)

                                          cTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTttc                                                                                             >  1:1453024/1‑140 (MQ=255)

                                           tGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTttct                                                                                            >  1:105426/1‑140 (MQ=255)

                                              cGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCg                                                                                         <  2:2195849/140‑1 (MQ=255)

                                              cGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCg                                                                                         <  2:514061/140‑1 (MQ=255)

                                              cGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCg                                                                                         >  1:1628106/1‑140 (MQ=255)

                                                gCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCa                                                                                       <  2:1736849/140‑1 (MQ=255)

                                                gCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCa                                                                                       <  2:1887130/140‑1 (MQ=255)

                                                    tgctgcTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGc                                                                                   >  1:1869056/1‑140 (MQ=255)

                                                    tgctgcTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGc                                                                                   <  2:775668/140‑1 (MQ=255)

                                                    tgctgcTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGc                                                                                   <  2:664976/140‑1 (MQ=255)

                                                     gctgctTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCt                                                                                  <  2:1051597/140‑1 (MQ=255)

                                                     gctgctTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCt                                                                                  <  1:355435/140‑1 (MQ=255)

                                                         ctTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCa                                                                                       >  1:2142662/1‑131 (MQ=255)

                                                         ctTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCa                                                                                       <  2:2142662/131‑1 (MQ=255)

                                                         ctTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTcc                                                                              >  1:203991/1‑140 (MQ=255)

                                                           tGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCtt                                                                            >  1:901362/1‑140 (MQ=255)

                                                           tGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCtt                                                                            >  1:2390411/1‑140 (MQ=255)

                                                            gAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCttt                                                                           <  2:1869056/140‑1 (MQ=255)

                                                              gCCACAACTGCCGCAAATCAGTAGCGCCAGTCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTa                                                                         >  1:2229303/1‑140 (MQ=255)

                                                                cacaACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTAcc                                                                       <  2:1784711/140‑1 (MQ=255)

                                                                 acaACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCa                                                                      <  1:924558/140‑1 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    <  2:192820/140‑1 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    <  2:1788755/140‑1 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    <  2:1779377/140‑1 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    <  2:1628106/140‑1 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    >  1:1765310/1‑140 (MQ=255)

                                                                   aaCTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCAtt                                                                    >  2:353677/1‑140 (MQ=255)

                                                                        ccGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGt                                                               >  1:1198885/1‑140 (MQ=255)

                                                                           cAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTaa                                                            <  2:309039/140‑1 (MQ=255)

                                                                           cAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTaa                                                            <  2:1198885/140‑1 (MQ=255)

                                                                           cAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTaa                                                            <  1:2325066/140‑1 (MQ=255)

                                                                             aaTCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCttt                                                                           >  1:1485891/1‑123 (MQ=255)

                                                                             aaTCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCttt                                                                           <  2:1485891/123‑1 (MQ=255)

                                                                             aaTCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATg                                                          >  2:976851/1‑140 (MQ=255)

                                                                                  gTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCg                                                     <  1:976851/140‑1 (MQ=255)

                                                                                            ccTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACgg                                           <  2:1631995/140‑1 (MQ=255)

                                                                                               gACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGgcgc                                        <  2:2229303/140‑1 (MQ=255)

                                                                                                  ggTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCtgg                                     <  1:1669062/140‑1 (MQ=255)

                                                                                                    tGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCtggca                                   <  2:1765310/140‑1 (MQ=255)

                                                                                                    tGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCtggca                                   <  2:1453024/140‑1 (MQ=255)

                                                                                                    tGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCtggca                                   <  2:624622/140‑1 (MQ=255)

                                                                                                                aTTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCtt                       >  1:1077670/1‑140 (MQ=255)

                                                                                                                aTTTGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCtt                       >  2:1496083/1‑140 (MQ=255)

                                                                                                                aTTTGCTCTATGGGAATGTGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGCTTCTTCGCAACGCTTTCCTTTTACCATTAACGATAATGGTTGGGGGGCTACGGCGCTGGCATGGCACTATCtt                       >  2:1355372/1‑140 (MQ=255)

                                                                                                                  ttGCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTcc                     <  1:1594919/140‑1 (MQ=255)

                                                                                                                    gCTCTATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCaa                   <  2:1739895/140‑1 (MQ=255)

                                                                                                                     ctctATGGTAATGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAac                  <  2:233315/140‑1 (MQ=255)

                                                                                                                               aTGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCg        >  1:162087/1‑140 (MQ=255)

                                                                                                                               aTGGGCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCC‑GGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGc       >  1:1724731/1‑140 (MQ=255)

                                                                                                                                  ggCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTg     >  2:440302/1‑140 (MQ=255)

                                                                                                                                  ggCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTg     >  1:1861886/1‑140 (MQ=255)

                                                                                                                                  ggCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTg     >  2:405321/1‑140 (MQ=255)

                                                                                                                                  ggCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTg     >  1:1839390/1‑140 (MQ=255)

                                                                                                                                  ggCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTg     >  1:1449596/1‑140 (MQ=255)

                                                                                                                                   gCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTgg    <  2:2390411/140‑1 (MQ=255)

                                                                                                                                   gCTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGACACTATCTTCCAACACAAGTACCGCTgg    <  2:538181/140‑1 (MQ=255)

                                                                                                                                    cTGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTGGc   >  1:2320677/1‑140 (MQ=255)

                                                                                                                                     tGGCAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTGGCg  <  1:579268/140‑1 (MQ=255)

AGTAGCAATGCTGGGGTCATGGAGATGATTAACATCGACTTACTGACGGCAATGCTGCTTGAGCCACAACTGCCGCAAATCAGTAGCGCCAGCCTGACGGTGGACAAACGGCATTTGCTCTATGGTAATGGGCTGGTAGATTCCCTTCCGCAACCTGAAGACAATGAAAACTATCAGGTTTCTTCGCAACGCTTTCCTTTTACCATTAACGTTAATGGTCCGGGGGCTACGGCGCTGGCATGGCACTATCTTCCAACACAATTACCGCTGGCG  >  NC_000913/1898898‑1899170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A