Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,975,233	T→C	Q31R (CAG→CGG)	cheA ←	chemotaxis protein CheA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,975,233	0	T	C	100.0%	489.5 / NA	134	Q31R (CAG→CGG)	cheA	chemotaxis protein CheA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (68/66); total (68/66)

Only 100 of 134 total aligned reads displayed.

GCTTCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCTGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAACACTGACCT  >  NC_000913/1975098‑1975369

gCTTCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCaa                                                                                                                                      >  1:1368699/1‑140 (MQ=255)

gCTTCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCaa                                                                                                                                      >  2:2088302/1‑140 (MQ=255)

 cTTCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCaaa                                                                                                                                     >  2:1143881/1‑140 (MQ=255)

  ttCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCaaaa                                                                                                                                    <  2:2140399/140‑1 (MQ=255)

  ttCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCaaaa                                                                                                                                    <  2:1616726/140‑1 (MQ=255)

  ttCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCACTTCCGGCCGCaaaa                                                                                                                                    >  1:87570/1‑140 (MQ=255)

     aTCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCa                                                                                                                                 <  2:2213943/140‑1 (MQ=255)

     aTCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCa                                                                                                                                 >  1:1433096/1‑140 (MQ=255)

       cGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGc                                                                                                                               <  2:779509/140‑1 (MQ=255)

       cGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGc                                                                                                                               <  1:1675845/140‑1 (MQ=255)

          gCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCaaa                                                                                                                            >  1:305882/1‑140 (MQ=255)

           cAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAAt                                                                                                                           >  1:1050364/1‑140 (MQ=255)

           cAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAAt                                                                                                                           <  2:1466851/140‑1 (MQ=255)

                    cATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCa                                                                                                                  <  2:578390/140‑1 (MQ=255)

                    cATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCa                                                                                                                  <  2:1368699/140‑1 (MQ=255)

                    cATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCa                                                                                                                  <  2:793778/140‑1 (MQ=255)

                    cATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCa                                                                                                                  <  1:640167/140‑1 (MQ=255)

                      tCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATg                                                                                                                <  1:322654/140‑1 (MQ=255)

                        aGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAAtg                                                                                                                          >  2:1827789/1‑128 (MQ=255)

                        aGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAAtg                                                                                                                          <  1:1827789/128‑1 (MQ=255)

                        aGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTc                                                                                                              >  2:687295/1‑140 (MQ=255)

                        aGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTc                                                                                                              >  2:928315/1‑140 (MQ=255)

                        aGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTc                                                                                                              >  1:2184194/1‑140 (MQ=255)

                         gATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCa                                                                                                             >  1:33457/1‑140 (MQ=255)

                          aTGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAg                                                                                                            >  2:1171437/1‑140 (MQ=255)

                            gCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGcc                                                                                                          <  2:330507/140‑1 (MQ=255)

                            gCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGcc                                                                                                          <  1:1391201/140‑1 (MQ=255)

                             cGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCa                                                                                                         >  1:2382279/1‑140 (MQ=255)

                               tGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAAc                                                                                                       >  1:1972987/1‑140 (MQ=255)

                                     ccTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCg                                                                                                 >  1:2380666/1‑140 (MQ=255)

                                       tGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTc                                                                                               >  2:564963/1‑140 (MQ=255)

                                           aaaCGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATTTCAGCCAACAGTTCGTCCGCt                                                                                           <  2:1050364/140‑1 (MQ=255)

                                            aaCGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCtt                                                                                          >  2:183903/1‑140 (MQ=255)

                                            aaCGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCt                                                                                           <  1:506793/139‑1 (MQ=255)

                                            aaCGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCt                                                                                           <  1:793522/139‑1 (MQ=255)

                                            aaCGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCt                                                                                           >  2:506793/1‑139 (MQ=255)

                                                   aaGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCaaa                                                                                   >  1:708869/1‑140 (MQ=255)

                                                        aaaaGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATg                                                                              >  1:118705/1‑140 (MQ=255)

                                                         aaaGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGt                                                                             <  1:687295/140‑1 (MQ=255)

                                                         aaaGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGt                                                                             <  1:845305/140‑1 (MQ=255)

                                                         aaaGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCACTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGt                                                                             <  2:87570/140‑1 (MQ=255)

                                                                  gCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATaaaa                                                                    <  2:33457/140‑1 (MQ=255)

                                                                   ccccTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATaaaaa                                                                   <  2:1062092/140‑1 (MQ=255)

                                                                   ccccTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATaaaaa                                                                   <  2:2116412/140‑1 (MQ=255)

                                                                    cccTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAAt                                                                  <  2:2296684/140‑1 (MQ=255)

                                                                       tcctTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGc                                                               >  2:1091987/1‑140 (MQ=255)

                                                                        cctTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCt                                                              <  2:832791/140‑1 (MQ=255)

                                                                         ctTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCtt                                                             <  2:890386/140‑1 (MQ=255)

                                                                         ctTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCtt                                                             <  1:1502415/140‑1 (MQ=255)

                                                                              aTCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATc                                                        >  1:1622864/1‑140 (MQ=255)

                                                                              aTCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATc                                                        <  2:1622864/140‑1 (MQ=255)

                                                                                  aGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATg                                                    >  2:758805/1‑140 (MQ=255)

                                                                                  aGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATg                                                    >  2:1240007/1‑140 (MQ=255)

                                                                                  aGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATg                                                    >  1:1729488/1‑140 (MQ=255)

                                                                                  aGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATACATg                                                    >  2:2062559/1‑140 (MQ=255)

                                                                                   gTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGc                                                   >  2:1094853/1‑140 (MQ=255)

                                                                                   gTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGc                                                   >  1:1881726/1‑140 (MQ=255)

                                                                                    tGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCt                                                  >  2:839366/1‑140 (MQ=255)

                                                                                     gggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTc                                                 <  1:564963/140‑1 (MQ=255)

                                                                                      ggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCa                                                >  2:14262/1‑140 (MQ=255)

                                                                                      ggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCa                                                >  2:2161854/1‑140 (MQ=255)

                                                                                      ggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCa                                                <  2:1972987/140‑1 (MQ=255)

                                                                                      ggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCa                                                >  2:2059709/1‑140 (MQ=255)

                                                                                      ggCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCa                                                >  2:1212990/1‑140 (MQ=255)

                                                                                            ccGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGt                                          >  2:2273274/1‑140 (MQ=255)

                                                                                             cGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTc                                         >  1:1209191/1‑140 (MQ=255)

                                                                                               aaaGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCAc                                       <  2:897168/140‑1 (MQ=255)

                                                                                               aaaGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCAc                                       <  1:1091987/140‑1 (MQ=255)

                                                                                                    tGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCgg                                  <  1:288845/140‑1 (MQ=255)

                                                                                                    tGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCgg                                  >  2:102394/1‑140 (MQ=255)

                                                                                                     ggCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCt                                     >  1:2093863/1‑136 (MQ=255)

                                                                                                     ggCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGt                                 >  2:571065/1‑140 (MQ=255)

                                                                                                     ggCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGt                                 >  1:1368835/1‑140 (MQ=255)

                                                                                                     ggCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCATCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGt                                 >  2:475515/1‑140 (MQ=255)

                                                                                                      gCATTCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGtt                                <  1:1240007/140‑1 (MQ=255)

                                                                                                          tCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGc                            <  1:758805/140‑1 (MQ=255)

                                                                                                          tCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGc                            >  2:783410/1‑140 (MQ=255)

                                                                                                          tCAATTGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGc                            >  2:1419476/1‑140 (MQ=255)

                                                                                                              ttGTTCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGAt                        <  1:928315/140‑1 (MQ=255)

                                                                                                                 ttCGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGc                     <  2:1881726/140‑1 (MQ=255)

                                                                                                                   cGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCt                                     <  1:22941/122‑1 (MQ=255)

                                                                                                                   cGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCt                                     >  2:22941/1‑122 (MQ=255)

                                                                                                                   cGGCATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATACATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCAt                   <  1:2062559/140‑1 (MQ=255)

                                                                                                                      cATCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATtgt                >  1:365998/1‑140 (MQ=255)

                                                                                                                        tCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTgg              <  1:783410/140‑1 (MQ=255)

                                                                                                                        tCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTgg              <  2:2380666/140‑1 (MQ=255)

                                                                                                                        tCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTgg              <  2:1729488/140‑1 (MQ=255)

                                                                                                                        tCTGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTgg              >  2:1827970/1‑140 (MQ=255)

                                                                                                                          tGGCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGa            <  2:1995886/140‑1 (MQ=255)

                                                                                                                           ggCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGaa           >  2:923967/1‑140 (MQ=255)

                                                                                                                           ggCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGaa           >  2:714576/1‑140 (MQ=255)

                                                                                                                           ggCGCTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGaa           <  1:571065/140‑1 (MQ=255)

                                                                                                                             cgcTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         <  2:365998/140‑1 (MQ=255)

                                                                                                                             cgcTTCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         <  1:2273274/140‑1 (MQ=255)

                                                                                                                                ttCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         <  1:1029625/137‑1 (MQ=255)

                                                                                                                                ttCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         >  2:687983/1‑137 (MQ=255)

                                                                                                                                ttCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         >  2:1029625/1‑137 (MQ=255)

                                                                                                                                ttCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAaca         <  1:687983/137‑1 (MQ=255)

                                                                                                                                 tCCGGCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAACACTGa     >  2:424257/1‑140 (MQ=255)

                                                                                                                                    ggCCGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAACACTGACCt  <  2:2250053/140‑1 (MQ=255)

GCTTCATCGAGCAGGTTTTCCATCAGATGCGTGGTTTCCTGCAAAACGCTGAAGCCAAAAGTTCCTGCCCCTCCTTTGATCGAGTGGGCAGCCCGAAAGATGGCATTCAATTGTTCGGCATCTGGCGCTTCCGGCTGCAAAACCAGCAAATGCTGCTCCATGTCAGCCAACAGTTCGTCCGCTTCATCAAAAAATGTCTGATAAAAATCGCTTATATCCATGCTCACGCTGTCACCTCGGTTCGGCTGATGGCATTGTGGGAACACTGACCT  >  NC_000913/1975098‑1975369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A