Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,033,994	(T)_8→7	intergenic (+255/‑57)	rseX → / → yedS	small regulatory RNA RseX/putative outer membrane protein YedS, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,033,987	0	T	.	100.0%	582.6 / NA	135	intergenic (+248/‑64)	rseX/yedS	small regulatory RNA RseX/putative outer membrane protein YedS, N‑terminal fragment
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (74/61); total (74/61)

Only 100 of 136 total aligned reads displayed.

TTCATGAATATTTATATTTAGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGCTTTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGTC  >  NC_000913/2033848‑2034122

ttCATGAATATTTATATTTAGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGCt                                                                                                                                         >  1:366672/1‑140 (MQ=255)

            tatatttaGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATaa                                                                                                                            <  2:275231/140‑1 (MQ=255)

               atttaGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACgg                                                                                                                         <  1:572277/140‑1 (MQ=255)

                 ttaGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCa                                                                                                                       <  2:167548/140‑1 (MQ=255)

                  taGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCAc                                                                                                                      <  2:307568/140‑1 (MQ=255)

                    gAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACtt                                                                                                                    <  2:366672/140‑1 (MQ=255)

                     aaTTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTa                                                                                                                   >  1:2253177/1‑140 (MQ=255)

                     aaTTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTa                                                                                                                   <  2:769452/140‑1 (MQ=255)

                         cATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCa                                                                                                                       >  1:580631/1‑132 (MQ=255)

                         cATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCa                                                                                                                       <  2:580631/132‑1 (MQ=255)

                         cATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGa                                                                                                               <  2:519164/140‑1 (MQ=255)

                          aTAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGat                                                                                                              >  2:2171716/1‑140 (MQ=255)

                               tATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATAtt                                                                                                         >  2:1108019/1‑140 (MQ=255)

                                 tGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTa                                                                                                                   <  2:1981134/128‑1 (MQ=255)

                                 tGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCa                                                                                                       >  2:797201/1‑140 (MQ=255)

                                  gAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCAt                                                                                                      <  2:44834/140‑1 (MQ=255)

                                    aTTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGa                                                                                                    >  2:678241/1‑140 (MQ=255)

                                        tatTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGAt                                                                                                >  1:2043368/1‑140 (MQ=255)

                                         atTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGAtt                                                                                               >  1:721814/1‑140 (MQ=255)

                                           tAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATtat                                                                                             <  2:112451/140‑1 (MQ=255)

                                             aaTAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATaa                                                                                           >  1:1396855/1‑140 (MQ=255)

                                             aaTAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATaa                                                                                           >  1:396299/1‑140 (MQ=255)

                                                aGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATca                                                                                        <  2:1963151/140‑1 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAAt                                                                                          >  1:491880/1‑136 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      <  1:1370059/140‑1 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      >  2:218224/1‑140 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      <  2:762888/140‑1 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      >  2:1074081/1‑140 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      >  1:1440057/1‑140 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      <  1:305629/140‑1 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATca                                                                                        >  1:906397/1‑138 (MQ=255)

                                                  aTTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACGTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATcaca                                                                                      >  2:2239126/1‑140 (MQ=255)

                                                    tAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAg                                                                                    >  1:2132234/1‑140 (MQ=255)

                                                    tAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAg                                                                                    >  1:406056/1‑140 (MQ=255)

                                                    tAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAg                                                                                    >  1:423765/1‑140 (MQ=255)

                                                    tAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAg                                                                                    >  1:1556111/1‑140 (MQ=255)

                                                     aGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAgg                                                                                   <  1:218224/140‑1 (MQ=255)

                                                       aaaCATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGa                                                                                 <  2:2043368/140‑1 (MQ=255)

                                                            ttttGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGa                                                                                 >  2:2067089/1‑135 (MQ=255)

                                                            ttttGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGa                                                                                 <  1:2067089/135‑1 (MQ=255)

                                                            ttttGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACa                                                                            >  1:1504538/1‑140 (MQ=255)

                                                             tttGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACAt                                                                           >  1:1363895/1‑140 (MQ=255)

                                                              ttGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATa                                                                          >  2:1684069/1‑140 (MQ=255)

                                                                gATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAAt                                                                        <  2:350450/140‑1 (MQ=255)

                                                                     cTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATgaaaa                                                                   >  1:1244424/1‑140 (MQ=255)

                                                                                          tGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGtt                                                           <  1:1599953/127‑1 (MQ=255)

                                                                                          tGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTgg                                              >  2:1837453/1‑140 (MQ=255)

                                                                                          tGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTgg                                              >  1:1710289/1‑140 (MQ=255)

                                                                                             aaTCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTcc                                           <  2:1244424/140‑1 (MQ=255)

                                                                                              aTCCTTAAAATAAAATGAACTTCATATAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTcac                                          >  2:2229116/1‑138 (MQ=255)

                                                                                              aTCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTccc                                          <  1:2122545/140‑1 (MQ=255)

                                                                                                   taaaataaaaTGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCg                                         <  2:2349519/136‑1 (MQ=255)

                                                                                                   taaaataaaaTGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCg                                         >  1:2349519/1‑136 (MQ=255)

                                                                                                   taaaataaaaTGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGt                                     >  1:700497/1‑140 (MQ=255)

                                                                                                           aatGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGtt                             >  1:1980177/1‑140 (MQ=255)

                                                                                                            atGAACTTCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTg                            <  1:1684069/140‑1 (MQ=255)

                                                                                                                  ttCATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGgcg                      >  2:1774325/1‑140 (MQ=255)

                                                                                                                  ttCATAGAATAGAATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGgcg                      >  2:543014/1‑140 (MQ=255)

                                                                                                                    cATAGAATAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCgca                    >  2:681756/1‑140 (MQ=255)

                                                                                                                         aaTAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCaaa               <  1:797201/140‑1 (MQ=255)

                                                                                                                         aaTAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCaaa               <  2:1504538/140‑1 (MQ=255)

                                                                                                                         aaTAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCaaa               <  1:678241/140‑1 (MQ=255)

                                                                                                                          aTAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAAt              >  2:140285/1‑140 (MQ=255)

                                                                                                                           tAGTATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATg             >  1:452317/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTgg                        >  1:440698/1‑126 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTgg                        <  2:440698/126‑1 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  2:2228038/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  2:970739/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  2:1910896/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  1:2293275/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  1:266042/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  1:530595/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  1:736015/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  2:1426945/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCgg          >  2:1953382/1‑140 (MQ=255)

                                                                                                                              tATCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAG‑TGCTGGCGCAGCAAATGCGGc         >  1:191540/1‑140 (MQ=255)

                                                                                                                               aTCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGc         >  2:230468/1‑140 (MQ=255)

                                                                                                                                tCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGgc                       <  2:1693991/125‑1 (MQ=255)

                                                                                                                                tCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGgc                       >  1:1693991/1‑125 (MQ=255)

                                                                                                                                tCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCaaa               >  2:1282910/1‑133 (MQ=255)

                                                                                                                                tCCAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCaaa               <  1:1282910/133‑1 (MQ=255)

                                                                                                                                tCCAAATGGGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGACCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCt        >  2:2285255/1‑140 (MQ=255)

                                                                                                                                 ccAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTg       <  1:230468/140‑1 (MQ=255)

                                                                                                                                 ccAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTg       <  1:1108019/140‑1 (MQ=255)

                                                                                                                                 ccAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTg       <  2:966268/140‑1 (MQ=255)

                                                                                                                                 ccAAATGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTg       <  1:1432637/140‑1 (MQ=255)

                                                                                                                                 ccAAATGTGC‑TTTTTTTGGATAACGACACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTg       <  1:992298/140‑1 (MQ=255)

                                                                                                                                   aaaTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGaa     <  2:406056/140‑1 (MQ=255)

                                                                                                                                   aaaTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGaa     <  2:1522456/140‑1 (MQ=255)

                                                                                                                                   aaaTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGaa     >  1:1731926/1‑140 (MQ=255)

                                                                                                                                   aaaTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGaa     <  2:648218/140‑1 (MQ=255)

                                                                                                                                   aaaTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGaa     >  1:1399500/1‑140 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  2:1999475/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  2:1763479/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  2:1731926/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  1:909266/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  1:140285/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  1:1190306/140‑1 (MQ=255)

                                                                                                                                     aTGTGC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGt   <  2:1465594/140‑1 (MQ=255)

                                                                                                                                      tgtgC‑TTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGTc  <  2:2293275/140‑1 (MQ=255)

TTCATGAATATTTATATTTAGAATTCATAATTATGAATTATATTAAATAGATTAGAAACATTTTGATATCTTTTAAATACATTTGTTACATGTAATCCTTAAAATAAAATGAACTTCATAGAATAGTATCCAAATGTGCTTTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAGTC  >  NC_000913/2033848‑2034122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A