Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,116,513 |
G→A |
G205G (GGC→GGT) |
wcaL ← |
putative colanic biosynthesis glycosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,116,513 | 0 | G | A | 99.0%
| 315.9
/ ‑5.6
| 95 | G205G (GGC→GGT) | wcaL | putative colanic biosynthesis glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (47/47); minor base C (0/1); total (47/48) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCTCTTTCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACGCCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAGTGTAGTGGTTGAG > NC_000913/2116379‑2116647
|
tGCTCTTTCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCAt > 2:493142/1‑140 (MQ=255)
ctctTTCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATgc > 2:2270412/1‑140 (MQ=255)
ctctTTCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATgc > 1:1756817/1‑140 (MQ=255)
tCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGAt > 1:2317545/1‑140 (MQ=255)
aCTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACg > 1:468424/1‑140 (MQ=255)
tGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGc > 1:760962/1‑140 (MQ=255)
tGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGc < 2:760962/140‑1 (MQ=255)
aCGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGa > 1:1912261/1‑140 (MQ=255)
cGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGAt > 1:779053/1‑140 (MQ=255)
ccACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTc < 1:817010/134‑1 (MQ=255)
ccACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTc > 2:817010/1‑134 (MQ=255)
ccACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAg > 1:881457/1‑140 (MQ=255)
ccACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAg > 2:772113/1‑140 (MQ=255)
ccACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAg > 1:1378321/1‑140 (MQ=255)
cacaTGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGc < 1:1566785/140‑1 (MQ=255)
aTGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCa > 1:2067637/1‑140 (MQ=255)
gCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCAtttttt > 2:1998613/1‑140 (MQ=255)
ccTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTg > 2:1717936/1‑140 (MQ=255)
tttttCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAg < 2:825032/140‑1 (MQ=255)
ttttCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGcc < 1:71235/127‑1 (MQ=255)
ttttCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGcc > 2:71235/1‑127 (MQ=255)
ttttCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGc > 1:125055/1‑140 (MQ=255)
ttttCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGc > 2:611721/1‑140 (MQ=255)
tctcGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCtt < 2:1705502/140‑1 (MQ=255)
ctcGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTc < 1:1193135/140‑1 (MQ=255)
tcGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTcc < 2:1286641/140‑1 (MQ=255)
ggTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTg < 2:749443/129‑1 (MQ=255)
ggTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTg > 1:749443/1‑129 (MQ=255)
gTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCa > 1:498185/1‑130 (MQ=255)
gTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCa < 2:498185/130‑1 (MQ=255)
gTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGc < 1:493142/140‑1 (MQ=255)
gTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGc < 2:468424/140‑1 (MQ=255)
gTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGc < 1:1717936/140‑1 (MQ=255)
ttAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGcc < 1:1041049/140‑1 (MQ=255)
ttAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGAcc < 1:1033057/140‑1 (MQ=255)
ttAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGACAGCCCATTTTTTGCAGCCTTCCgacc < 1:804924/140‑4 (MQ=255)
aaGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCca < 2:2039001/140‑1 (MQ=255)
gCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCcaca < 2:1378321/140‑1 (MQ=255)
gCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTc > 2:844443/1‑127 (MQ=255)
gCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTc < 1:844443/127‑1 (MQ=255)
gCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGCCCCACAGATc > 2:785373/1‑140 (MQ=255)
cGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGcc > 2:1006674/1‑123 (MQ=255)
cGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGcc < 1:1006674/123‑1 (MQ=255)
cGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCg > 2:803302/1‑140 (MQ=255)
gACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCcaca > 2:1471451/1‑134 (MQ=255)
gACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCcaca < 1:1471451/134‑1 (MQ=255)
gACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGc > 1:908062/1‑140 (MQ=255)
gACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGc > 1:1453020/1‑140 (MQ=255)
gACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTACAGCCTTCCGGCCCACAGATCGc < 2:1968409/140‑1 (MQ=255)
cGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCtt < 1:1410592/140‑1 (MQ=255)
cGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCtt < 1:389429/140‑1 (MQ=255)
ggAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTa < 1:2270412/140‑1 (MQ=255)
gAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTAt > 1:418389/1‑140 (MQ=255)
aataatCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACCCCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCg < 2:2067637/140‑1 (MQ=255)
taatCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGt < 1:772113/140‑1 (MQ=255)
tctcCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAAc > 2:2039962/1‑140 (MQ=255)
ctcCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACa > 2:626145/1‑140 (MQ=255)
cAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCa > 1:650258/1‑140 (MQ=255)
cAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCa > 1:166706/1‑140 (MQ=255)
cAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCa > 2:2198419/1‑140 (MQ=255)
cAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCa > 2:2189393/1‑140 (MQ=255)
gcggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAgg > 2:981582/1‑140 (MQ=255)
gcggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAgg > 2:498598/1‑140 (MQ=255)
cggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGt < 1:2348569/140‑1 (MQ=255)
cggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGt > 1:161830/1‑140 (MQ=255)
cggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGt > 2:1447823/1‑140 (MQ=255)
cggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGt > 2:159449/1‑140 (MQ=255)
cggcgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGt > 2:2348569/1‑140 (MQ=255)
cgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGc < 2:779053/140‑1 (MQ=255)
cgTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGc < 2:418389/140‑1 (MQ=255)
ttGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGc > 1:1214710/1‑138 (MQ=255)
ttGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGc < 2:1214710/138‑1 (MQ=255)
ttGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCa > 1:544666/1‑140 (MQ=255)
ttGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCa > 1:168062/1‑140 (MQ=255)
cTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAAc < 2:650258/140‑1 (MQ=255)
cTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAAc < 2:166706/140‑1 (MQ=255)
ttCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAg > 2:544488/1‑140 (MQ=255)
tCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGt < 1:2262525/140‑1 (MQ=255)
tCACGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGt < 1:2039962/140‑1 (MQ=255)
cGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGc < 1:803302/140‑1 (MQ=255)
cGGGACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGc < 2:168062/140‑1 (MQ=255)
ggACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTg < 2:908062/140‑1 (MQ=255)
gACGCGGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGa > 2:427817/1‑140 (MQ=255)
cgGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATAtt < 1:2189393/140‑1 (MQ=255)
cgGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATAtt < 1:635036/140‑1 (MQ=255)
cgGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATAtt < 1:544488/140‑1 (MQ=255)
cgGGCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATAtt < 2:1756817/140‑1 (MQ=255)
gCTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCgg < 1:2198419/140‑1 (MQ=255)
cTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCggg < 1:1897643/140‑1 (MQ=255)
cTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCggg < 1:1447823/140‑1 (MQ=255)
cTAAAGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCggg < 1:981582/140‑1 (MQ=255)
aaaGCGCGTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAg < 2:1912261/140‑1 (MQ=255)
gTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAGTGTAGTg > 2:1436402/1‑140 (MQ=255)
gTCATATCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAGTGTAGTg > 2:2076557/1‑140 (MQ=255)
tCTACACCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAGTGTAGTGGTTGAg < 1:1998613/140‑1 (MQ=255)
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TGCTCTTTCAACTGACGGCAGGCTTCGATCGCCACATGCAGGCCTTTTTTCTCGGTTAAGCGTGCGACGGAAATAATCTCCAGCGGCGTTGCGGGCGCTTTCACGGGACGCGGGCTAAAGCGCGTCATATCTACGCCCATGCGCGATACGGCGATTTTTTCCCTCGGGCAGCCCATTTTTTGCAGCCTTCCGGCCCACAGATCGCTTATCGGTAACATCAGGTCGCCACGGCGAAACAGTTGCTGATATTCGGGAGTGTAGTGGTTGAG > NC_000913/2116379‑2116647
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
