Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,224,154 G→C G239G (GGC→GGG)  pbpG ← peptidoglycan DD‑endopeptidase PbpG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,224,1540GC100.0% 359.7 / NA 101G239G (GGC→GGG) pbpGpeptidoglycan DD‑endopeptidase PbpG
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (57/44);  total (57/44)

Only 100 of 101 total aligned reads displayed.

AGGCATCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGGCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGGT  >  NC_000913/2224019‑2224282
                                                                                                                                       |                                                                                                                                
aGGCATCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCccg                                                                                                                              >  1:833357/1‑140 (MQ=255)
aGGCATCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCccg                                                                                                                              <  1:2037990/140‑1 (MQ=255)
aGGCATCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCccg                                                                                                                              <  2:2091760/140‑1 (MQ=255)
     tCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCa                                                                                                                         <  2:69407/140‑1 (MQ=255)
            aCCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCccg                                                                                                                              >  1:552764/1‑128 (MQ=255)
            aCCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCccg                                                                                                                              <  2:552764/128‑1 (MQ=255)
            aCCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGGTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTaa                                                                                                                  >  2:1679001/1‑140 (MQ=255)
              cGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAg                                                                                                                >  2:2303759/1‑140 (MQ=255)
                 tttCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCg                                                                                                             >  1:966281/1‑140 (MQ=255)
                  ttCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCgg                                                                                                            >  1:42558/1‑140 (MQ=255)
                  ttCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCgg                                                                                                            <  1:1815494/140‑1 (MQ=255)
                   tCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGt                                                                                                           >  2:673200/1‑140 (MQ=255)
                    cAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGtt                                                                                                          <  2:1938446/140‑1 (MQ=255)
                     aaTCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGttt                                                                                                         >  1:2036787/1‑140 (MQ=255)
                           ggTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTa                                                                                                   >  2:1882312/1‑140 (MQ=255)
                           ggTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTa                                                                                                   <  1:1240734/140‑1 (MQ=255)
                           ggTACGCAGGCGGCTGGCATCGGCAAAATGGGGATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTa                                                                                                   >  2:160277/1‑140 (MQ=255)
                            gTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCCCCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTaa                                                                                                  <  2:90093/140‑1 (MQ=255)
                            gTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTaa                                                                                                  <  2:1856784/140‑1 (MQ=255)
                            gTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGAATTGGTAAAGCCGGTTTTGGTTaa                                                                                                  >  2:2347771/1‑140 (MQ=255)
                                 cAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGaa                                                                                             >  1:1680724/1‑140 (MQ=255)
                                 cAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGaa                                                                                             >  2:2129867/1‑140 (MQ=255)
                                   ggcggcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAata                                                                                           >  1:1077663/1‑140 (MQ=255)
                                    gcggcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTaa                                                                                                  >  1:69675/1‑132 (MQ=255)
                                    gcggcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTaa                                                                                                  <  2:69675/132‑1 (MQ=255)
                                       gcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTcc                                                                                       >  2:1802942/1‑140 (MQ=255)
                                       gcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTcc                                                                                       >  2:73146/1‑140 (MQ=255)
                                       gcTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTcc                                                                                       >  2:1850362/1‑140 (MQ=255)
                                             aTCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTAt                                                                                 <  1:1850362/140‑1 (MQ=255)
                                             aTCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTAt                                                                                 <  2:323709/140‑1 (MQ=255)
                                                  cAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGa                                                                            >  2:1523326/1‑140 (MQ=255)
                                                  cAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGa                                                                            <  1:1882312/140‑1 (MQ=255)
                                                   aaaaTGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGAt                                                                           <  2:1077663/140‑1 (MQ=255)
                                                       tGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATacac                                                                       <  1:160277/140‑1 (MQ=255)
                                                       tGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATacac                                                                       <  2:525856/140‑1 (MQ=255)
                                                        gggTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACAcc                                                                      <  1:2129867/140‑1 (MQ=255)
                                                          gTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAg                                                                    <  2:1442030/140‑1 (MQ=255)
                                                          gTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAg                                                                    <  2:888628/140‑1 (MQ=255)
                                                          gTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAg                                                                    <  2:42558/140‑1 (MQ=255)
                                                          gTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAg                                                                    <  1:920081/140‑1 (MQ=255)
                                                           tataTTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAga                                                                   >  2:825672/1‑140 (MQ=255)
                                                           tataTTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAga                                                                   >  2:1196181/1‑140 (MQ=255)
                                                            atatTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGAATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgat                                                                  <  1:2347771/140‑1 (MQ=255)
                                                               tttGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgatgat                                                               >  1:1017107/1‑140 (MQ=255)
                                                               tttGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgatgat                                                               <  1:1279210/140‑1 (MQ=255)
                                                               tttGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgatgat                                                               <  1:1802942/140‑1 (MQ=255)
                                                                   ccAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGa                                                                            <  1:735394/123‑1 (MQ=255)
                                                                   ccAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGa                                                                            >  2:735394/1‑123 (MQ=255)
                                                                   ccAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGt                                                           >  1:2219351/1‑140 (MQ=255)
                                                                   ccAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGt                                                           >  1:542306/1‑140 (MQ=255)
                                                                   ccAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGt                                                           >  2:522026/1‑140 (MQ=255)
                                                                       aCGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACAcc                                                                      >  2:2327443/1‑125 (MQ=255)
                                                                       aCGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACAcc                                                                      <  1:2327443/125‑1 (MQ=255)
                                                                            tCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgat                                                                  <  1:1137569/124‑1 (MQ=255)
                                                                            tCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAgat                                                                  >  2:1137569/1‑124 (MQ=255)
                                                                               aTCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACgg                                               <  2:2219351/140‑1 (MQ=255)
                                                                                tCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGc                                              <  2:1848628/140‑1 (MQ=255)
                                                                                 cACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCa                                             <  2:542306/140‑1 (MQ=255)
                                                                                 cACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCa                                             <  2:1017107/140‑1 (MQ=255)
                                                                                         gcgcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATAc                                     >  1:1275898/1‑140 (MQ=255)
                                                                                          cgcCCCCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACg                                    <  2:2073619/140‑1 (MQ=255)
                                                                                          cgcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACg                                    <  2:814827/140‑1 (MQ=255)
                                                                                          cgcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACg                                    <  2:1275898/140‑1 (MQ=255)
                                                                                          cgcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACg                                    >  1:1718187/1‑140 (MQ=255)
                                                                                           gcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGt                                   >  1:1530444/1‑140 (MQ=255)
                                                                                           gcCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGt                                   <  1:2303759/140‑1 (MQ=255)
                                                                                            ccACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTc                                  >  1:1738828/1‑140 (MQ=255)
                                                                                             cACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCg                                 >  2:815000/1‑140 (MQ=255)
                                                                                              aCCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCgg                                >  1:1589955/1‑140 (MQ=255)
                                                                                              aCCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCgg                                >  1:2242894/1‑140 (MQ=255)
                                                                                                cGGTTTATTATTGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGAt                              >  1:1156335/1‑140 (MQ=255)
                                                                                                        tattGATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAg                      <  2:1530444/140‑1 (MQ=255)
                                                                                                            gATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGa                               <  2:1458418/127‑1 (MQ=255)
                                                                                                            gATAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGa                               >  1:1458418/1‑127 (MQ=255)
                                                                                                             aTAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGc                 >  1:1113072/1‑140 (MQ=255)
                                                                                                             aTAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGc                 >  1:484327/1‑140 (MQ=255)
                                                                                                             aTAACCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGc                 >  1:2049166/1‑140 (MQ=255)
                                                                                                               aaCCGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCa               >  1:1332273/1‑140 (MQ=255)
                                                                                                                 ccGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCata             >  1:1050978/1‑140 (MQ=255)
                                                                                                                 ccGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCata             >  1:1646708/1‑140 (MQ=255)
                                                                                                                 ccGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCata             <  1:2055146/140‑1 (MQ=255)
                                                                                                                 ccGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCata             >  1:890658/1‑140 (MQ=255)
                                                                                                                 ccGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCata             >  2:896351/1‑140 (MQ=255)
                                                                                                                  cGTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCatat            >  1:1289403/1‑140 (MQ=255)
                                                                                                                   gTACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATc           <  2:1589955/140‑1 (MQ=255)
                                                                                                                    tACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCt          >  1:25123/1‑140 (MQ=255)
                                                                                                                    tACGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCt          >  2:1394479/1‑140 (MQ=255)
                                                                                                                      cGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTc        >  1:1495750/1‑140 (MQ=255)
                                                                                                                      cGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTc        >  1:1931624/1‑140 (MQ=255)
                                                                                                                      cGCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTc        <  2:833357/140‑1 (MQ=255)
                                                                                                                       gCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTcc       >  1:1718406/1‑140 (MQ=255)
                                                                                                                       gCATCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTcc       >  1:1091952/1‑140 (MQ=255)
                                                                                                                         aTCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCg     >  1:1334795/1‑140 (MQ=255)
                                                                                                                          tCACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCgg    >  1:1758438/1‑140 (MQ=255)
                                                                                                                           cACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCggg   <  2:484327/140‑1 (MQ=255)
                                                                                                                           cACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCggg   <  2:2242894/140‑1 (MQ=255)
                                                                                                                           cACCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCggg   <  2:1334795/140‑1 (MQ=255)
                                                                                                                            aCCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGgt  >  2:1294361/1‑140 (MQ=255)
                                                                                                                            aCCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGgt  >  1:715053/1‑140 (MQ=255)
                                                                                                                            aCCAGACAATGCCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGgt  >  1:377788/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                
AGGCATCACTTTACCGGTTTCAATCCAGGTACGCAGGCGGCTGGCATCGGCAAAATGGGTATATTTGCCAAACGCGTCCATCACTACCAGCGCCACCGGTTTATTATTGATAACCGTACGCATCACCAGACAATGGCCCGCCGCATTGGTAAAGCCGGTTTTGGTTAACTGAATATTCCAGTTATCGCGATACACCAGATGATTAGTATTGCGGAACGGCAGCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGGT  >  NC_000913/2224019‑2224282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A