Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,233,515	A→G	H213R (CAC→CGC)	sanA →	DUF218 domain‑containing protein SanA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,233,515	0	A	G	100.0%	483.2 / NA	135	H213R (CAC→CGC)	sanA	DUF218 domain‑containing protein SanA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (64/71); total (64/71)

Only 100 of 137 total aligned reads displayed.

TGCCGTACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGATA  >  NC_000913/2233378‑2233650

tGCCGTACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGcc                                                                                                                                       >  1:545310/1‑140 (MQ=255)

 gCCGTACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCa                                                                                                                                      <  1:2036699/140‑1 (MQ=255)

   cGTACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAgg                                                                                                                                    >  2:977734/1‑140 (MQ=255)

     tACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTa                                                                                                                                  >  2:54073/1‑140 (MQ=255)

     tACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTa                                                                                                                                  >  2:1708393/1‑140 (MQ=255)

     tACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTa                                                                                                                                  >  1:215089/1‑140 (MQ=255)

     tACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTa                                                                                                                                  >  1:1806788/1‑140 (MQ=255)

       ccGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTAcc                                                                                                                                >  2:1917557/1‑140 (MQ=255)

          tCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGa                                                                                                                             >  1:519906/1‑140 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACTGGAAg                                                                                                                           <  1:486555/140‑1 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           >  1:1837739/1‑140 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           <  2:519906/140‑1 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           >  1:2410870/1‑140 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           >  1:571230/1‑140 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           <  1:825453/140‑1 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           <  2:1272371/140‑1 (MQ=255)

            aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAg                                                                                                                           <  1:1734750/140‑1 (MQ=255)

               gAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATg                                                                                                                        <  2:1837739/140‑1 (MQ=255)

                aaaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATg                                                                                                                        <  2:642339/139‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  1:549542/140‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  1:63186/140‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  2:2283032/140‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  1:2260752/140‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  2:618651/140‑1 (MQ=255)

                 aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcg                                                                                                                      <  2:545310/140‑1 (MQ=255)

                  aGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcgc                                                                                                                     >  2:2104738/1‑140 (MQ=255)

                  aGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATgcgc                                                                                                                     <  1:659873/140‑1 (MQ=255)

                    atatGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAg                                                                                                                   >  1:653200/1‑140 (MQ=255)

                      atGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAggg                                                                                                                 >  2:1948966/1‑140 (MQ=255)

                       tGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAgggg                                                                                                                >  2:739883/1‑140 (MQ=255)

                            tCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATcc                                                                                                           >  2:2176893/1‑140 (MQ=255)

                             cAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCGGACCTTTATATTTTTAAACGTGACCGGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGAAAGATGCGCAGGGGTATccc                                                                                                          <  2:2400414/140‑1 (MQ=255)

                              aGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCccg                                                                                                         >  2:2269614/1‑140 (MQ=255)

                              aGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCccg                                                                                                         >  2:612343/1‑140 (MQ=255)

                                tACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCccgcc                                                                                                       >  2:104218/1‑140 (MQ=255)

                                  cGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGt                                                                                                     <  2:336087/140‑1 (MQ=255)

                                    tATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTca                                                                                                   <  1:2360077/140‑1 (MQ=255)

                                     aTTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTcac                                                                                                  >  2:1498682/1‑140 (MQ=255)

                                      ttCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTcaca                                                                                                 >  2:1996926/1‑140 (MQ=255)

                                        cGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACAcc                                                                                               >  2:1629035/1‑140 (MQ=255)

                                        cGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACAcc                                                                                               >  2:476103/1‑140 (MQ=255)

                                         gTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACAccc                                                                                              <  2:486696/140‑1 (MQ=255)

                                          tGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCg                                                                                             <  1:220945/140‑1 (MQ=255)

                                           gAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGa                                                                                            <  1:1917557/140‑1 (MQ=255)

                                            aaTTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGaa                                                                                           >  1:2199094/1‑140 (MQ=255)

                                            aaTTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGaa                                                                                           <  2:665025/140‑1 (MQ=255)

                                              tttGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACa                                                                                         >  2:924600/1‑140 (MQ=255)

                                                  ccgccCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTa                                                                                     >  2:2079527/1‑140 (MQ=255)

                                                    gccCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACt                                                                                   <  2:2148215/140‑1 (MQ=255)

                                                      ccGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTg                                                                                 <  1:1996926/140‑1 (MQ=255)

                                                          ttCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAAtt                                                                             <  1:1675772/140‑1 (MQ=255)

                                                          ttCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAAtt                                                                             <  1:65421/140‑1 (MQ=255)

                                                              gTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACaa                                                                         <  1:2234057/140‑1 (MQ=255)

                                                              gTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACaa                                                                         <  1:2079527/140‑1 (MQ=255)

                                                                  gctggctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGa                                                                     <  2:1422279/140‑1 (MQ=255)

                                                                      gctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACa                                                                 <  1:2210814/140‑1 (MQ=255)

                                                                        tgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAg                                                               <  1:2243087/140‑1 (MQ=255)

                                                                        tgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAg                                                               <  2:1806788/140‑1 (MQ=255)

                                                                            cTTTCTATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGaaa                                                           <  2:1619815/140‑1 (MQ=255)

                                                                             tttATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAag                                                          <  1:476103/140‑1 (MQ=255)

                                                                             tttATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAag                                                          <  2:521718/140‑1 (MQ=255)

                                                                                atatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGa                                                                     <  1:1055818/126‑1 (MQ=255)

                                                                                atatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGa                                                                     >  2:1055818/1‑126 (MQ=255)

                                                                                atatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGaaa                                                           >  2:18361/1‑136 (MQ=255)

                                                                                atatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagtag                                                       >  1:2301475/1‑140 (MQ=255)

                                                                                atatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagtag                                                       >  2:45493/1‑140 (MQ=255)

                                                                                 tatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagtagt                                                      <  2:2410870/140‑1 (MQ=255)

                                                                                 tatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagtagt                                                      <  2:2064118/140‑1 (MQ=255)

                                                                                 tatTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagtagt                                                      <  1:739883/140‑1 (MQ=255)

                                                                                    ttttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTAt                                                   <  1:612343/140‑1 (MQ=255)

                                                                                    ttttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTAt                                                   >  2:142772/1‑140 (MQ=255)

                                                                                    ttttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTAt                                                   <  2:2300629/140‑1 (MQ=255)

                                                                                     tttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATg                                                  >  2:1403493/1‑140 (MQ=255)

                                                                                      ttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATgg                                                 >  2:1336957/1‑140 (MQ=255)

                                                                                      ttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATgg                                                 >  1:1743813/1‑140 (MQ=255)

                                                                                      ttAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATgg                                                 >  2:1804320/1‑140 (MQ=255)

                                                                                         aaCGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGa                                                             >  1:1218617/1‑125 (MQ=255)

                                                                                         aaCGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGa                                                             <  2:1218617/125‑1 (MQ=255)

                                                                                         aaCGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAagt                                                         <  2:226692/129‑1 (MQ=255)

                                                                                              gAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTAcag                                         <  2:2301475/140‑1 (MQ=255)

                                                                                               aaCCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTAcagc                                        <  1:1498682/140‑1 (MQ=255)

                                                                                               aaCCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTAcagc                                        >  2:375291/1‑140 (MQ=255)

                                                                                               aaCCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTAca                                          >  1:738685/1‑138 (MQ=255)

                                                                                               aaCCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTAca                                          <  2:738685/138‑1 (MQ=255)

                                                                                                   gcgTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGtt                                    >  1:1947626/1‑140 (MQ=255)

                                                                                                               gCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGc                        >  2:2350570/1‑140 (MQ=255)

                                                                                                               gCCGCTGGTCCCTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGc                        <  1:1250702/140‑1 (MQ=255)

                                                                                                                 cattGGTCCATATTCCGTCTATGCGCCAGTTACCGGAAGATGCGCAGGGTTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAGCAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGGCGTTGCCg                      <  2:289532/137‑1 (MQ=255)

                                                                                                                         ccTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTc              <  2:1034069/140‑1 (MQ=255)

                                                                                                                          cTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTcc             <  2:1743813/140‑1 (MQ=255)

                                                                                                                          cTATTCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTcc             <  1:2300751/140‑1 (MQ=255)

                                                                                                                             ttCCGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTa          <  1:227976/140‑1 (MQ=255)

                                                                                                                               ccGGCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATc        <  1:1804320/140‑1 (MQ=255)

                                                                                                                                 ggCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGc                        >  1:2213852/1‑122 (MQ=255)

                                                                                                                                 ggCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGc                        <  2:2213852/122‑1 (MQ=255)

                                                                                                                                  gCTATGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCg     >  1:146697/1‑140 (MQ=255)

                                                                                                                                     aTGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGata  >  2:1138372/1‑140 (MQ=255)

                                                                                                                                     aTGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGata  >  2:2016452/1‑140 (MQ=255)

                                                                                                                                     aTGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGata  >  1:1484427/1‑140 (MQ=255)

                                                                                                                                     aTGCGCCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGata  >  2:2261836/1‑140 (MQ=255)

TGCCGTACCGTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACAAAAGAAACAAGGAAAGTAGTTATGGATGTACAGCAGTTTTTTGTCGTTGCCGTTTTTTTCCTTATCCCGATA  >  NC_000913/2233378‑2233650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A