Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,350,215	G→A	A266V (GCC→GTC)	glpQ ←	glycerophosphoryl diester phosphodiesterase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,350,215	0	G	A	100.0%	802.2 / NA	232	A266V (GCC→GTC)	glpQ	glycerophosphoryl diester phosphodiesterase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (121/111); total (121/111)

Only 100 of 237 total aligned reads displayed.

ATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTC  >  NC_000913/2350079‑2350351

 tGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACAcc                                                                                                                                      >  2:1682365/1‑140 (MQ=255)

   cACTAGCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGGGAGATTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:1176927/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:1492158/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:1319381/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:2269166/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:630255/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:2330703/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:1792216/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:171760/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:600320/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:1590097/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:1523298/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:1538275/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:450035/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:307494/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:339783/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:975772/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:2100345/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  1:1037213/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCg                                                                                                                                    >  2:245238/1‑140 (MQ=255)

   cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCACCACCTGTTTCATGACACCCg                                                                                                                                    >  2:2051192/1‑140 (MQ=255)

      tACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCt                                                                                                                                 <  1:1441052/140‑1 (MQ=255)

        ccAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTa                                                                                                                               >  1:292380/1‑140 (MQ=255)

              tATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATc                                                                                                                         <  2:1033663/140‑1 (MQ=255)

                    gctgAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCg                                                                                                                   <  2:55945/140‑1 (MQ=255)

                    gctgAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCg                                                                                                                   <  1:1001184/140‑1 (MQ=255)

                      tgAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTa                                                                                                                 >  1:851527/1‑140 (MQ=255)

                       gAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAg                                                                                                                <  1:1739009/140‑1 (MQ=255)

                       gAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAg                                                                                                                <  1:1816873/140‑1 (MQ=255)

                        aGCATCTTGCACCACGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGt                                                                                                               >  2:749607/1‑140 (MQ=255)

                         gCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGCCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGtt                                                                                                              <  2:1803833/140‑1 (MQ=255)

                                       gCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGc                                                                                                >  1:39136/1‑140 (MQ=255)

                                       gCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGc                                                                                                >  1:676815/1‑140 (MQ=255)

                                       gCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGc                                                                                                >  1:69725/1‑140 (MQ=255)

                                            tGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAAcc                                                                                                    <  1:872729/131‑1 (MQ=255)

                                            tGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCa                                                                                           >  1:2061108/1‑140 (MQ=255)

                                            tGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCa                                                                                           >  2:97152/1‑140 (MQ=255)

                                              aGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATc                                                                                         >  2:2306764/1‑140 (MQ=255)

                                                tttGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCg                                                                                       >  1:1341375/1‑140 (MQ=255)

                                                  tGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGc                                                                                     <  2:1979369/140‑1 (MQ=255)

                                                                 gCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGtt                                                                      <  1:1837891/140‑1 (MQ=255)

                                                                  cGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGttt                                                                     >  2:1162550/1‑140 (MQ=255)

                                                                  cGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGttt                                                                     >  1:1019045/1‑140 (MQ=255)

                                                                   gATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTc                                                                    <  1:1176927/140‑1 (MQ=255)

                                                                         tcctcAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCa                                                              <  2:1590097/140‑1 (MQ=255)

                                                                         tcctcAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCa                                                              <  2:1361058/140‑1 (MQ=255)

                                                                         tcctcAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCa                                                              <  2:307494/140‑1 (MQ=255)

                                                                          cctcAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAg                                                             <  1:259513/140‑1 (MQ=255)

                                                                           ctcAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGt                                                            <  2:1465259/140‑1 (MQ=255)

                                                                            tcaatcaaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTc                                                           >  2:2182108/1‑140 (MQ=255)

                                                                                tcaaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGta                                                       <  1:1170333/140‑1 (MQ=255)

                                                                                 caaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCATGTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGtat                                                      >  2:2235207/1‑140 (MQ=255)

                                                                                 caaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGtat                                                      >  1:2358514/1‑140 (MQ=255)

                                                                                 caaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGtat                                                      <  1:600320/140‑1 (MQ=255)

                                                                                 caaCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGtat                                                      >  1:1463036/1‑140 (MQ=255)

                                                                                   aCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAg                                                    >  2:1229784/1‑140 (MQ=255)

                                                                                   aCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAg                                                    >  2:722636/1‑140 (MQ=255)

                                                                                      tatGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCa                                                 <  2:686764/140‑1 (MQ=255)

                                                                                       atGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCaa                                                <  2:262193/140‑1 (MQ=255)

                                                                                       atGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCaa                                                <  2:1341375/140‑1 (MQ=255)

                                                                                       atGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCaa                                                <  2:810513/140‑1 (MQ=255)

                                                                                        tGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAAt                                               <  1:1226562/140‑1 (MQ=255)

                                                                                        tGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAAt                                               >  1:1603136/1‑140 (MQ=255)

                                                                                          gTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCa                                                              <  1:1655053/123‑1 (MQ=255)

                                                                                           tAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAg                                            <  2:1896015/140‑1 (MQ=255)

                                                                                           tAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAg                                            <  1:1083493/140‑1 (MQ=255)

                                                                                           tAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAg                                            <  2:125652/140‑1 (MQ=255)

                                                                                              tCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTg                                         >  2:2296002/1‑140 (MQ=255)

                                                                                              tCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTg                                         >  1:2146220/1‑140 (MQ=255)

                                                                                              tCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTg                                         >  2:1140735/1‑140 (MQ=255)

                                                                                              tCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTg                                         >  1:313428/1‑140 (MQ=255)

                                                                                                   aCCAATACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCa                                    >  2:872690/1‑140 (MQ=255)

                                                                                                       aTACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGAtt                                >  1:14288/1‑140 (MQ=255)

                                                                                                        tACCATCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTg                               >  1:1160267/1‑140 (MQ=255)

                                                                                                             tCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGt                                        >  1:2300945/1‑126 (MQ=255)

                                                                                                             tCTGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTc                          >  2:1557474/1‑140 (MQ=255)

                                                                                                               tGCATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCa                        >  2:1452210/1‑140 (MQ=255)

                                                                                                                 cATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATg                      <  2:292380/140‑1 (MQ=255)

                                                                                                                 cATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATg                      <  1:71314/140‑1 (MQ=255)

                                                                                                                 cATATTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATg                      <  1:780492/140‑1 (MQ=255)

                                                                                                                  atatTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTAcc                                     <  1:1276183/124‑1 (MQ=255)

                                                                                                                  atatTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGc                     >  1:1072660/1‑140 (MQ=255)

                                                                                                                  atatTCCGCCACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGc                     >  1:993357/1‑140 (MQ=255)

                                                                                                                         cccACCTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCAtttt              <  2:2330703/139‑1 (MQ=255)

                                                                                                                             ccTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGt          >  2:106440/1‑140 (MQ=255)

                                                                                                                              cTGTTTCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTATCCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGtt         >  2:702244/1‑140 (MQ=255)

                                                                                                                                 tttCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCa      >  2:1614710/1‑140 (MQ=255)

                                                                                                                                  ttCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATg                      >  2:1739758/1‑123 (MQ=255)

                                                                                                                                   tCATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGc    <  2:1072660/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  2:1830453/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  2:313428/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  2:1531025/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  1:615131/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  1:1945324/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  1:153572/140‑1 (MQ=255)

                                                                                                                                    cATGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCt   <  2:978086/140‑1 (MQ=255)

                                                                                                                                     aTGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTc  <  2:1511137/140‑1 (MQ=255)

                                                                                                                                     aTGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTc  <  2:14288/140‑1 (MQ=255)

                                                                                                                                     aTGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTc  <  1:567168/140‑1 (MQ=255)

                                                                                                                                     aTGACACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTc  <  1:482271/140‑1 (MQ=255)

ATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGTCGGTATAGGCAATCAGCTGTACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTC  >  NC_000913/2350079‑2350351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A