Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,396,080	T→C	E124G (GAA→GGA)	nuoI ←	NADH:quinone oxidoreductase subunit I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,396,080	0	T	C	100.0%	352.2 / NA	99	E124G (GAA→GGA)	nuoI	NADH:quinone oxidoreductase subunit I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/45); total (54/45)

Only 100 of 105 total aligned reads displayed.

TCGTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATTCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGCTT  >  NC_000913/2395945‑2396215

tCGTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCcccc                                                                                                                                     <  1:1680168/140‑1 (MQ=255)

 cGTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATcccccc                                                                                                                                    >  1:1937538/1‑140 (MQ=255)

  gTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCa                                                                                                                                   >  2:1760518/1‑140 (MQ=255)

  gTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCa                                                                                                                                   >  2:1914150/1‑140 (MQ=255)

   ttCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATcccc                                                                                                                                      >  2:2258364/1‑136 (MQ=255)

   ttCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATcccc                                                                                                                                      <  1:2258364/136‑1 (MQ=255)

   ttCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCAt                                                                                                                                  >  1:2343873/1‑140 (MQ=255)

        tGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATcccc                                                                                                                                      <  2:2241844/131‑1 (MQ=255)

        tGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATcccc                                                                                                                                      >  1:2241844/1‑131 (MQ=255)

        tGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGa                                                                                                                             >  2:1996993/1‑140 (MQ=255)

        tGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCAATTTCGa                                                                                                                             >  1:1603871/1‑140 (MQ=255)

           ttCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAAt                                                                                                                          >  1:2243938/1‑140 (MQ=255)

           ttCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAAt                                                                                                                          >  1:1212523/1‑140 (MQ=255)

            tCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATc                                                                                                                         <  2:480352/140‑1 (MQ=255)

             cGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATcc                                                                                                                        >  1:313009/1‑140 (MQ=255)

             cGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATcc                                                                                                                        <  2:439838/140‑1 (MQ=255)

             cGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATcc                                                                                                                        <  1:1713305/140‑1 (MQ=255)

             cGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATcc                                                                                                                        <  1:634736/140‑1 (MQ=255)

             cGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATcc                                                                                                                        <  2:1136855/140‑1 (MQ=255)

                  ttATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGt                                                                                                                   >  2:2126005/1‑140 (MQ=255)

                    aTCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTa                                                                                                                 >  2:2008331/1‑140 (MQ=255)

                       tttGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACt                                                                                                              >  1:158397/1‑140 (MQ=255)

                         tGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGa                                                                                                            >  2:1770783/1‑140 (MQ=255)

                              tCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGc                                                                                                       >  1:528384/1‑140 (MQ=255)

                              tCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGc                                                                                                       >  2:2270491/1‑140 (MQ=255)

                               cGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGcc                                                                                                      <  1:612007/140‑1 (MQ=255)

                               cGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGcc                                                                                                      >  1:94243/1‑140 (MQ=255)

                               cGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGcc                                                                                                      >  2:1873356/1‑140 (MQ=255)

                               cGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGcc                                                                                                      <  2:1937538/140‑1 (MQ=255)

                                        tACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGa                                                                                             <  2:2343873/140‑1 (MQ=255)

                                            tGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  1:1751205/140‑1 (MQ=255)

                                            tGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  2:528384/140‑1 (MQ=255)

                                            tGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  1:2008331/140‑1 (MQ=255)

                                            tGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  1:1948837/140‑1 (MQ=255)

                                             gCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         >  1:160063/1‑139 (MQ=255)

                                             gCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  2:160063/139‑1 (MQ=255)

                                             gCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGc                                                                                        >  2:1660251/1‑140 (MQ=255)

                                               cATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         <  1:1509293/137‑1 (MQ=255)

                                               cATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAgg                                                                                         >  2:1509293/1‑137 (MQ=255)

                                                 tCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGcttct                                                                                    <  2:1670426/140‑1 (MQ=255)

                                                  ccGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGcttctt                                                                                   >  1:2086354/1‑140 (MQ=255)

                                                      tAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTGACTGAATCGCCGTGGTCGGACAGGCTTCTTCGca                                                                               <  1:1703955/140‑1 (MQ=255)

                                                      tAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGGCAGGCTTCTTCGca                                                                               <  1:1750555/140‑1 (MQ=255)

                                                      tAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGca                                                                               <  1:2270491/140‑1 (MQ=255)

                                                      tAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGca                                                                               <  2:462876/140‑1 (MQ=255)

                                                        gAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGcaca                                                                             <  1:2272117/140‑1 (MQ=255)

                                                        gAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGcaca                                                                             <  1:627324/140‑1 (MQ=255)

                                                           gTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCttcttcaca                                                                               <  2:2274919/135‑4 (MQ=255)

                                                           gTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTcaca                                                                               >  1:2274919/1‑135 (MQ=255)

                                                           gTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGAc                                                                          <  1:1760518/140‑1 (MQ=255)

                                                           gTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGAc                                                                          >  1:1076838/1‑140 (MQ=255)

                                                            ttATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGAcc                                                                         <  2:1388975/140‑1 (MQ=255)

                                                              atatTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACcac                                                                       <  2:2086354/140‑1 (MQ=255)

                                                                   ccGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGaaa                                                                  >  2:1781073/1‑140 (MQ=255)

                                                                   ccGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGaaa                                                                  >  1:765874/1‑140 (MQ=255)

                                                                   ccGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGaaa                                                                  >  1:236273/1‑140 (MQ=255)

                                                                     gggTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTAGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAAt                                                                >  2:2037894/1‑140 (MQ=255)

                                                                      ggTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATg                                                               >  2:1837812/1‑140 (MQ=255)

                                                                      ggTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATg                                                               >  2:2316777/1‑140 (MQ=255)

                                                                           ttGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCg                                                          <  1:1413432/140‑1 (MQ=255)

                                                                            tGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGt                                                         <  1:1785959/140‑1 (MQ=255)

                                                                            tGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGt                                                         <  1:1660251/140‑1 (MQ=255)

                                                                                cggaccggaGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTgaga                                                     >  1:2382684/1‑140 (MQ=255)

                                                                                 ggaccggcGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGCGAGaa                                                    >  2:169791/1‑140 (MQ=255)

                                                                                  gaccggaGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAg                                                   >  2:1879837/1‑140 (MQ=255)

                                                                                   accggaGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGt                                                  <  2:1076838/140‑1 (MQ=255)

                                                                                             agcagATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGaa                                        >  1:2409483/1‑140 (MQ=255)

                                                                                             agcagATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGaa                                        >  1:380886/1‑140 (MQ=255)

                                                                                             agcagATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGaa                                        >  1:929777/1‑140 (MQ=255)

                                                                                             agcagATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGaa                                        >  2:450074/1‑140 (MQ=255)

                                                                                             agcagATCCTCTTTCTCGTAAACCAGATCCTAGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGaa                                        >  1:2115944/1‑140 (MQ=255)

                                                                                                  aTCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAAtt                                   >  2:1554021/1‑140 (MQ=255)

                                                                                                  aTCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAAtt                                   <  1:1879837/140‑1 (MQ=255)

                                                                                                    ccTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTcc                                 >  2:2368196/1‑140 (MQ=255)

                                                                                                     ctctTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCg                                >  2:530530/1‑140 (MQ=255)

                                                                                                      tctTTCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGAGGAAAAATTCCgg                               <  1:1270834/140‑1 (MQ=255)

                                                                                                         ttCTCGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTa                            >  1:1391099/1‑140 (MQ=255)

                                                                                                             cGTAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAg                        >  1:2021816/1‑140 (MQ=255)

                                                                                                               tAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCg                      <  2:739982/140‑1 (MQ=255)

                                                                                                               tAAACCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCg                      <  2:2364588/140‑1 (MQ=255)

                                                                                                                 aaCCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGAc                    <  2:376881/140‑1 (MQ=255)

                                                                                                                  aCCAGATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGAcc                   >  2:389017/1‑140 (MQ=255)

                                                                                                                      gATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCt               >  2:2007274/1‑140 (MQ=255)

                                                                                                                      gATCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCt               >  1:435861/1‑140 (MQ=255)

                                                                                                                       aTCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCtt              <  2:929777/140‑1 (MQ=255)

                                                                                                                        tCCTGGCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCttt             >  1:1499533/1‑140 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCg                      >  2:2169863/1‑127 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCg                      <  1:2169863/127‑1 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCg                  >  1:1428722/1‑131 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCg                  <  2:1428722/131‑1 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGtt         >  1:2210358/1‑140 (MQ=255)

                                                                                                                            ggCGCTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGAC‑GGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGttt        >  1:1845583/1‑140 (MQ=255)

                                                                                                                             gcgcTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGttt        <  2:236273/140‑1 (MQ=255)

                                                                                                                             gcgcTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCAACCGTCTTTGGttt        <  2:2409483/140‑1 (MQ=255)

                                                                                                                              cgcTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTc       >  1:966062/1‑140 (MQ=255)

                                                                                                                              cgcTTGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTc       >  1:1243395/1‑140 (MQ=255)

                                                                                                                                 ttGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGc    <  1:1914150/140‑1 (MQ=255)

                                                                                                                                 ttGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGc    >  1:1021060/1‑140 (MQ=255)

                                                                                                                                  tGTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGCt   >  1:359035/1‑140 (MQ=255)

                                                                                                                                   gTATCCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGCtt  >  2:1805039/1‑140 (MQ=255)

TCGTTCTCTGCTTCGCCCTTATCTTTGCCGTCGATTGCCATACCTGCCATCCGGTAGAAGTTATATTCCGGGTATTTGCCCGGACCGGAGATCAGCAGATCCTCTTTCTCGTAAACCAGATCCTGGCGCTTGTATTCCCCCATTTCGAAATCCGGGGTTAACTGAATCGCCGTGGTCGGACAGGCTTCTTCGCACAGACCACAGAAAATGCAGCGTGAGAAGTTGATGCGGAAAAATTCCGGGTACCAGCGACCGTCTTTGGTTTCTGCTT  >  NC_000913/2395945‑2396215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A