Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,667,775 T→C L24L (CTA→CTG)  hcaT ← putative 3‑phenylpropionate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,667,7750TC100.0% 262.2 / NA 73L24L (CTA→CTG) hcaTputative 3‑phenylpropionate transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/38);  total (35/38)

GGAAGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGTAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGAAAAAT  >  NC_000913/2667646‑2667909
                                                                                                                                 |                                                                                                                                      
ggAAGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGc                                                                                                                              >  2:830144/1‑140 (MQ=255)
  aaGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCg                                                                                                                            >  2:288406/1‑140 (MQ=255)
  aaGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCg                                                                                                                            >  2:2072421/1‑140 (MQ=255)
   aGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGt                                                                                                                           <  1:1026473/140‑1 (MQ=255)
   aGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGt                                                                                                                           <  1:2411992/140‑1 (MQ=255)
   aGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGt                                                                                                                           <  1:2072421/140‑1 (MQ=255)
       tCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGt                                                                                                                           >  1:162586/1‑136 (MQ=255)
       tCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGt                                                                                                                           <  2:162586/136‑1 (MQ=255)
           tGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTaaaa                                                                                                                   <  1:2020631/140‑1 (MQ=255)
           tGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTaaaa                                                                                                                   <  1:2083188/140‑1 (MQ=255)
               gcgGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGt                                                                                                               <  2:1449787/140‑1 (MQ=255)
                cgGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTaaaa                                                                                                                   <  1:2258363/135‑1 (MQ=255)
                cgGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTaaaa                                                                                                                   >  2:2258363/1‑135 (MQ=255)
                  gggCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTAtg                                                                                                            <  1:99261/140‑1 (MQ=255)
                  gggCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTAtg                                                                                                            >  2:895951/1‑140 (MQ=255)
                  gggCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTAtg                                                                                                            >  1:2212502/1‑140 (MQ=255)
                   ggCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTAtgt                                                                                                           >  1:1915600/1‑140 (MQ=255)
                     cgcgATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGa                                                                                                         >  1:233430/1‑140 (MQ=255)
                         aTGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATa                                                                                                     >  2:1575921/1‑140 (MQ=255)
                            aGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGcc                                                                                                  <  2:233319/140‑1 (MQ=255)
                            aGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGcc                                                                                                  <  1:2326598/140‑1 (MQ=255)
                            aGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGcc                                                                                                  <  1:1546326/140‑1 (MQ=255)
                              cAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGa                                                                                                <  1:2393316/140‑1 (MQ=255)
                                      cGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGaaa                                                                                                       <  1:2047384/125‑1 (MQ=255)
                                      cGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGaaa                                                                                                       >  2:2047384/1‑125 (MQ=255)
                                        aGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCa                                                                                      >  1:1642906/1‑140 (MQ=255)
                                             aCGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGcgcg                                                                                 >  2:1487403/1‑140 (MQ=255)
                                             aCGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGcgcg                                                                                 >  1:1430514/1‑140 (MQ=255)
                                               gggCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTg                                                                               <  1:333451/140‑1 (MQ=255)
                                               gggCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTg                                                                               <  2:2176615/140‑1 (MQ=255)
                                               gggCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTg                                                                               >  1:2321360/1‑140 (MQ=255)
                                                 gCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGa                                                                             <  2:1835502/140‑1 (MQ=255)
                                                         aCCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCaaaa                                                                     >  1:670805/1‑140 (MQ=255)
                                                             gCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCAt                                                                 <  2:1642906/140‑1 (MQ=255)
                                                              cccccAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATg                                                                <  1:830144/140‑1 (MQ=255)
                                                               ccccAATAACGGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGa                                                               >  1:2380141/1‑140 (MQ=255)
                                                                   aaTAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGtcc                                                           >  1:1476605/1‑140 (MQ=255)
                                                                        cAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGtccctccc                                                      >  2:276139/1‑140 (MQ=255)
                                                                           gCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGtccctc                                                        <  2:30957/135‑1 (MQ=255)
                                                                           gCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGtccctc                                                        >  1:30957/1‑135 (MQ=255)
                                                                            ccGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCa                                                  <  1:2177677/140‑1 (MQ=255)
                                                                             cGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCag                                                 >  2:183608/1‑140 (MQ=255)
                                                                              gATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGCAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCagg                                                <  2:1915600/140‑1 (MQ=255)
                                                                               aTGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCagga                                               >  1:1989034/1‑140 (MQ=255)
                                                                               aTGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGAAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCagg                                                >  2:1337127/1‑139 (MQ=255)
                                                                               aTGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGAAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCagg                                                <  1:1337127/139‑1 (MQ=255)
                                                                                   tttCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCg                                           <  1:276139/140‑1 (MQ=255)
                                                                                   tttCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCg                                           <  2:987372/140‑1 (MQ=255)
                                                                                    ttCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGt                                          <  2:245005/140‑1 (MQ=255)
                                                                                     tCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGtt                                         >  1:178765/1‑140 (MQ=255)
                                                                                     tCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGtt                                         >  2:1384622/1‑140 (MQ=255)
                                                                                        ggCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAGATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGt                                      <  2:2321360/140‑1 (MQ=255)
                                                                                        ggCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGt                                      <  1:1575921/140‑1 (MQ=255)
                                                                                            ttAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTgg                                  >  2:181955/1‑140 (MQ=255)
                                                                                              aaaCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTgggg                                <  2:2380141/140‑1 (MQ=255)
                                                                                              aaaCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTgggg                                <  1:895951/140‑1 (MQ=255)
                                                                                              aaaCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTgggg                                >  2:719223/1‑140 (MQ=255)
                                                                                               aaCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGt                               <  1:1356614/140‑1 (MQ=255)
                                                                                               aaCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGt                               <  1:719223/140‑1 (MQ=255)
                                                                                                aCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGtt                              <  2:1989034/140‑1 (MQ=255)
                                                                                                aCCAATCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGtt                              <  2:178765/140‑1 (MQ=255)
                                                                                                    aTCCCTTTAAGCCAGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATc                          <  2:233430/140‑1 (MQ=255)
                                                                                                                 aGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTaa                            <  1:1148304/125‑1 (MQ=255)
                                                                                                                 aGACGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTaa                            >  2:1148304/1‑125 (MQ=255)
                                                                                                                   aCGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGc              <  1:799069/137‑1 (MQ=255)
                                                                                                                   aCGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGc              >  2:799069/1‑137 (MQ=255)
                                                                                                                   aCGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAg           >  1:440888/1‑140 (MQ=255)
                                                                                                                   aCGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAg           >  1:2189311/1‑140 (MQ=255)
                                                                                                                   aCGCTCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAg           >  1:2094413/1‑140 (MQ=255)
                                                                                                                       tCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGa       >  1:1813581/1‑140 (MQ=255)
                                                                                                                       tCCAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCGCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGa       >  2:2155227/1‑140 (MQ=255)
                                                                                                                         cAGAAAGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGaaa     >  2:830836/1‑140 (MQ=255)
                                                                                                                            aaaGGCAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGAAAAAt  <  1:393135/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                      
GGAAGGATCGCTGACGCGGGGCGCGATGAGCAAACTCCCGAGGAAACGGGCAACCAGACCTGCCCCCAATAACAGGCCGATGGTTTCTGGCGTTAAACCAATCCCTTTAAGCCAGACGCTCCAGAAAGGTAGAAAAATGCCGTAACTAAAAAAGTATGTGAAATAGCCGAGCGCCAACCAGCGCGTGGATTGCAAAACCATGAGTCCCTCCCGTCAGGAGGCGTTAGTCTGGGGTTAATCGAATGTTGGTGCAAGTTGAAAAAT  >  NC_000913/2667646‑2667909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A