Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,718,291	T→C	T80A (ACG→GCG)	yfiF ←	putative methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,718,291	0	T	C	100.0%	289.6 / NA	80	T80A (ACG→GCG)	yfiF	putative methyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (49/31); total (49/31)

CTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGACGCCCGCC  >  NC_000913/2718164‑2718423

ctctGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCGTTTCCGGCGCCTCATCACCCgg                                                                                                                          >  1:1704803/1‑140 (MQ=255)

   tGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGgcgc                                                                                                                       <  1:62492/140‑1 (MQ=255)

   tGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGgcgc                                                                                                                       <  1:2232357/140‑1 (MQ=255)

   tGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGgcg                                                                                                                        <  2:389207/139‑1 (MQ=255)

   tGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGgcg                                                                                                                        >  1:389207/1‑139 (MQ=255)

          gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGaa                                                                                                                >  1:359588/1‑140 (MQ=255)

          gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGaa                                                                                                                >  2:953552/1‑140 (MQ=255)

          gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGaa                                                                                                                >  2:61817/1‑140 (MQ=255)

             ccTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAAcc                                                                                                             >  2:3518/1‑140 (MQ=255)

               tGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGt                                                                                                           >  1:1016278/1‑140 (MQ=255)

                    tGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGcc                                                                                                      <  2:1016278/140‑1 (MQ=255)

                     gCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCa                                                                                                     >  1:1302925/1‑140 (MQ=255)

                         tttCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGc                                                                                                 <  1:2017055/140‑1 (MQ=255)

                           tCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCg                                                                                                <  1:1658595/139‑1 (MQ=255)

                           tCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCg                                                                                                >  2:1658595/1‑139 (MQ=255)

                              ccGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATc                                                                                            >  2:1543179/1‑140 (MQ=255)

                                      gcgGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAACCTTTTACCACTGATGCCACCGTGTCCGGCCTTTTCCGGCGCCTCATCGCCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACt                                                                                    <  2:2189685/140‑1 (MQ=255)

                                       cgGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACtt                                                                                   <  2:359588/140‑1 (MQ=255)

                                       cgGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACtt                                                                                   <  1:2034894/140‑1 (MQ=255)

                                             tcttcCGCACGCTGACGACGCAGCACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTc                                                                             <  2:1412903/140‑1 (MQ=255)

                                              cttcCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCa                                                                            <  1:1387322/140‑1 (MQ=255)

                                              cttcCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCa                                                                            <  1:61817/140‑1 (MQ=255)

                                                   gCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACgggg                                                                       <  1:3518/140‑1 (MQ=255)

                                                    cACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCTGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTcc                                                                                        >  2:90899/1‑122 (MQ=255)

                                                    cACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCTGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTcc                                                                                        <  1:90899/122‑1 (MQ=255)

                                                    cACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGc                                                                      >  2:1162121/1‑140 (MQ=255)

                                                       gCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGa                                                                   <  1:246769/140‑1 (MQ=255)

                                                       gCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGa                                                                   <  1:2044822/140‑1 (MQ=255)

                                                       gCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGa                                                                   <  1:1162121/140‑1 (MQ=255)

                                                        cTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAc                                                                  >  2:760748/1‑140 (MQ=255)

                                                         tGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAct                                                                 <  1:735220/140‑1 (MQ=255)

                                                         tGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAct                                                                 <  2:744771/140‑1 (MQ=255)

                                                           acgacgCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGActct                                                               >  2:1818574/1‑140 (MQ=255)

                                                                 cAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGt                                                         >  2:1272123/1‑140 (MQ=255)

                                                                 cAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGt                                                         >  1:1065427/1‑140 (MQ=255)

                                                                     acTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATc                                                     >  1:2250462/1‑140 (MQ=255)

                                                                         ccGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcgg                                                 >  1:741211/1‑140 (MQ=255)

                                                                         ccGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcgg                                                 <  2:1302925/140‑1 (MQ=255)

                                                                         ccGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcgg                                                 >  2:968260/1‑140 (MQ=255)

                                                                          cGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcggg                                                >  2:806272/1‑140 (MQ=255)

                                                                            gATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCgcgggcg                                              <  2:1368530/140‑1 (MQ=255)

                                                                              tCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGcgggcggg                                            <  1:806272/140‑1 (MQ=255)

                                                                               cAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcgggg                                           >  2:422873/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  2:2054226/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  2:2110406/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  2:482891/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  2:2301964/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  1:1064639/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  2:1355080/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  1:1330926/1‑140 (MQ=255)

                                                                                 aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCgggcggggcg                                         >  1:775700/1‑140 (MQ=255)

                                                                                  tAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGa                                        <  1:968260/140‑1 (MQ=255)

                                                                                      aCTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCTGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGc                                    <  2:1259824/140‑1 (MQ=255)

                                                                                            aCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGt                              >  1:712360/1‑140 (MQ=255)

                                                                                            aCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGt                              >  1:1637006/1‑140 (MQ=255)

                                                                                            aCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGt                              >  2:561440/1‑140 (MQ=255)

                                                                                                cTGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGc                          >  2:2287052/1‑140 (MQ=255)

                                                                                                 tGATGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCa                         <  1:1355080/140‑1 (MQ=255)

                                                                                                    tGCCACCGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACga                      >  1:202240/1‑140 (MQ=255)

                                                                                                          cGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGAtttt                >  2:2122102/1‑140 (MQ=255)

                                                                                                          cGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGAtttt                >  2:294123/1‑140 (MQ=255)

                                                                                                          cGTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGAtttt                >  2:294950/1‑140 (MQ=255)

                                                                                                           gTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTc               >  1:345579/1‑140 (MQ=255)

                                                                                                           gTGATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTc               >  2:1674546/1‑140 (MQ=255)

                                                                                                             gATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCa                         >  1:784855/1‑128 (MQ=255)

                                                                                                             gATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCa                         <  2:784855/128‑1 (MQ=255)

                                                                                                             gATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCt             >  1:862890/1‑140 (MQ=255)

                                                                                                             gATCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCt             >  2:1615242/1‑140 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCa                         <  1:49239/127‑1 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCa                         >  2:49239/1‑127 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTg            >  1:410058/1‑140 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTg            >  1:1647510/1‑140 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTg            >  2:1207717/1‑140 (MQ=255)

                                                                                                              aTCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTg            >  2:2342093/1‑140 (MQ=255)

                                                                                                               tCGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTgg           >  2:725997/1‑140 (MQ=255)

                                                                                                                cGGCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGa          <  2:1704803/140‑1 (MQ=255)

                                                                                                                  gCCTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGAcg        <  1:953552/140‑1 (MQ=255)

                                                                                                                   ccTTTTCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGAcgc       >  2:997079/1‑140 (MQ=255)

                                                                                                                        tCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGAcgcccgcc  <  1:1674546/140‑1 (MQ=255)

                                                                                                                        tCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGAcgcccgcc  <  1:2342093/140‑1 (MQ=255)

                                                                                                                        tCCGGCGCCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGAcgcccgcc  <  1:997079/140‑1 (MQ=255)

CTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGACGCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCGGCGCGCGGGAAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCTGGACGCCCGCC  >  NC_000913/2718164‑2718423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A