Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,742,347	T→C	V158A (GTC→GCC)	yfiR →	DUF4154 domain‑containing protein YfiR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,742,347	0	T	C	100.0%	637.5 / NA	176	V158A (GTC→GCC)	yfiR	DUF4154 domain‑containing protein YfiR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (84/92); total (84/92)

Only 100 of 178 total aligned reads displayed.

GTCAAAGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGTCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTATGATGCT  >  NC_000913/2742213‑2742477

 tCAAAGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAAccc                                                                                                                              >  2:9199/1‑140 (MQ=255)

 tCAAAGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAAccc                                                                                                                              >  2:344949/1‑140 (MQ=255)

   aaaGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCgg                                                                                                                            <  1:2070257/140‑1 (MQ=255)

     aGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGAt                                                                                                                          >  1:1848429/1‑140 (MQ=255)

         gTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCt                                                                                                                      >  2:1868083/1‑140 (MQ=255)

            attattaATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTaa                                                                                                                   >  2:610744/1‑140 (MQ=255)

                    ttGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCa                                                                                                           <  1:9199/140‑1 (MQ=255)

                     tGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCgg                                                                                                                            >  2:957205/1‑122 (MQ=255)

                     tGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCgg                                                                                                                            <  1:957205/122‑1 (MQ=255)

                     tGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCtt                                                                                                                     >  1:608416/1‑129 (MQ=255)

                     tGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCtt                                                                                                                     <  2:608416/129‑1 (MQ=255)

                     tGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCAc                                                                                                          >  2:1100923/1‑140 (MQ=255)

                       ccGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCa                                                                                                           <  1:992643/137‑1 (MQ=255)

                       ccGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACgg                                                                                                        >  2:1332385/1‑140 (MQ=255)

                        cGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGga                                                                                                       >  2:742960/1‑140 (MQ=255)

                               aaTACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGaaaaa                                                                                                >  1:827823/1‑140 (MQ=255)

                                 tACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAatg                                                                                              >  2:297480/1‑140 (MQ=255)

                                   ccGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAatgat                                                                                            <  1:1592114/140‑1 (MQ=255)

                                     gAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATgg                                                                                          >  2:2022386/1‑140 (MQ=255)

                                      aGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGa                                                                                         >  1:415733/1‑140 (MQ=255)

                                      aGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGa                                                                                         >  2:1409091/1‑140 (MQ=255)

                                       gTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGAt                                                                                        <  2:1238616/140‑1 (MQ=255)

                                       gTGCATTATTGATAGCGACTTTTGTCTGATCATCCCCAATAATGGCGTCAGATTTGCCGTAATCCTCGATGCCTTATCGCGTAGAGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGAt                                                                                        >  2:530817/1‑140 (MQ=255)

                                         gCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATaa                                                                                      >  1:118288/1‑140 (MQ=255)

                                          cATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAAc                                                                                     >  1:1544107/1‑140 (MQ=255)

                                          cATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAAc                                                                                     >  2:251104/1‑140 (MQ=255)

                                           attattGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACg                                                                                    >  1:1476819/1‑140 (MQ=255)

                                              attGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATa                                                                                 <  2:1278692/140‑1 (MQ=255)

                                               ttGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  2:1435409/140‑1 (MQ=255)

                                               ttGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  2:1742016/140‑1 (MQ=255)

                                               ttGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  1:1534004/140‑1 (MQ=255)

                                               ttGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  1:605912/140‑1 (MQ=255)

                                                 ggTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAAtt                                                                              <  2:1476819/140‑1 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAAtt                                                                              <  2:476537/139‑1 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAAtt                                                                              >  1:476537/1‑139 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATtc                                                                             >  1:1107150/1‑140 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATtc                                                                             >  1:421451/1‑140 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATtc                                                                             >  1:1629098/1‑140 (MQ=255)

                                                  gTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATtc                                                                             >  1:502959/1‑140 (MQ=255)

                                                    aGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGAt                                                                                        <  2:516817/127‑1 (MQ=255)

                                                    aGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  2:963204/135‑1 (MQ=255)

                                                    aGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATtctc                                                                           >  1:586255/1‑140 (MQ=255)

                                                     gcgcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                >  1:1237576/1‑134 (MQ=255)

                                                      cgcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATaa                                                                                      >  1:1350679/1‑127 (MQ=255)

                                                      cgcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCtt                                                                         >  2:861089/1‑140 (MQ=255)

                                                       gcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATaa                                                                                      >  1:340887/1‑126 (MQ=255)

                                                       gcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                >  2:1553084/1‑132 (MQ=255)

                                                       gcCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATaa                                                                                <  1:1553084/132‑1 (MQ=255)

                                                         cTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTtaat                                                                      >  1:489712/1‑140 (MQ=255)

                                                                   atcatcCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCa                                                            >  2:2112058/1‑140 (MQ=255)

                                                                   atcatcCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCa                                                            >  2:1234597/1‑140 (MQ=255)

                                                                   atcatcCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCa                                                            >  1:2214603/1‑140 (MQ=255)

                                                                            aataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTaaaa                                                   <  1:1409091/140‑1 (MQ=255)

                                                                            aataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTaaaa                                                   <  2:1873537/140‑1 (MQ=255)

                                                                            aataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTaaaa                                                   <  2:1516727/140‑1 (MQ=255)

                                                                             ataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAag                                                  >  2:1938098/1‑140 (MQ=255)

                                                                             ataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAag                                                  >  1:516670/1‑140 (MQ=255)

                                                                             ataatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAag                                                  >  2:1331737/1‑140 (MQ=255)

                                                                               aatGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAagag                                                <  2:516670/140‑1 (MQ=255)

                                                                                atGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGc                                               >  1:440691/1‑140 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              <  1:297480/140‑1 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              <  1:2362170/140‑1 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              >  1:798091/1‑140 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              >  2:1193866/1‑140 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              >  1:1960693/1‑140 (MQ=255)

                                                                                 tGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              >  1:1314713/1‑140 (MQ=255)

                                                                                  gACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCAt                                             <  1:2023497/140‑1 (MQ=255)

                                                                                    cGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTa                                           <  1:1861800/140‑1 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         >  1:1915207/1‑140 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         >  2:1497525/1‑140 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         <  2:1542757/140‑1 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         <  2:1558142/140‑1 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         >  1:998491/1‑140 (MQ=255)

                                                                                      tCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACg                                         >  2:276472/1‑140 (MQ=255)

                                                                                        aGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGCGTAAAAGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCa                                       >  2:1648474/1‑140 (MQ=255)

                                                                                           tttGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACa                                    <  1:872569/140‑1 (MQ=255)

                                                                                           tttGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACa                                    <  1:1723960/140‑1 (MQ=255)

                                                                                           tttGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACa                                    <  2:60127/140‑1 (MQ=255)

                                                                                               ccGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              <  2:2403895/126‑1 (MQ=255)

                                                                                               ccGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCa                                              >  1:2403895/1‑126 (MQ=255)

                                                                                                  tAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTAt                             <  2:421451/140‑1 (MQ=255)

                                                                                                   aaaCCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAAc                                     <  2:1374971/131‑1 (MQ=255)

                                                                                                   aaaCCTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATg                            <  1:861089/140‑1 (MQ=255)

                                                                                                       cTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCa                        <  1:1234597/140‑1 (MQ=255)

                                                                                                       cTGGATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCa                        <  1:1239603/140‑1 (MQ=255)

                                                                                                         ggATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGc                      <  2:12002/140‑1 (MQ=255)

                                                                                                         ggATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGc                      <  1:1124575/140‑1 (MQ=255)

                                                                                                         ggATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGc                      <  1:530817/140‑1 (MQ=255)

                                                                                                         ggATGCCTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGc                      <  1:242124/140‑1 (MQ=255)

                                                                                                              ccTTATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATAtt                 <  1:755385/140‑1 (MQ=255)

                                                                                                                 tATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTAt              <  1:2112058/140‑1 (MQ=255)

                                                                                                                 tATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTAt              <  1:1062257/140‑1 (MQ=255)

                                                                                                                 tATCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTAt              <  1:87628/140‑1 (MQ=255)

                                                                                                                   tCGCGTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCa            <  2:2211485/140‑1 (MQ=255)

                                                                                                                      cgTAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTa         <  2:875816/140‑1 (MQ=255)

                                                                                                                        tAGCTGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTatg       <  2:2214603/140‑1 (MQ=255)

                                                                                                                        tAGCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTatg       >  2:666276/1‑140 (MQ=255)

                                                                                                                          gCGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCATTatgat     <  2:785517/140‑1 (MQ=255)

                                                                                                                           cGGTGTAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTatgatg    <  2:1174539/140‑1 (MQ=255)

                                                                                                                             gtgtAAAGGCCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTATGATGCt  <  1:1497525/140‑1 (MQ=255)

GTCAAAGGCGTTATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAATGACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGTCAACCCGGATGTCTTAATGCTCGCACGGAAGAAAAATGATGGATAACGATAATTCTCTTAATAAGCGCCCCACGTTTAAAAGAGCATTACGCAACATCAGTATGACCAGCATATTTATCACTATGATGCT  >  NC_000913/2742213‑2742477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A