Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,742,729 T→C F116S (TTC→TCC)  dgcN → diguanylate cyclase DgcN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,742,7290TC100.0% 341.9 / NA 95F116S (TTC→TCC) dgcNdiguanylate cyclase DgcN
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (48/47);  total (48/47)

ATGGCCCTGCAGCAACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTTCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTTCGCTCG  >  NC_000913/2742597‑2742863
                                                                                                                                    |                                                                                                                                      
aTGGCCCTGCAGCAACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAAt                                                                                                                                 >  1:2331607/1‑140 (MQ=255)
     ccTGCAGCAACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCAt                                                                                                                            <  2:1607158/140‑1 (MQ=255)
       tGCAGCAACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGACAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATaa                                                                                                                          <  2:1490944/140‑1 (MQ=255)
            caACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCAc                                                                                                                     <  2:1513331/140‑1 (MQ=255)
              aCTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCAc                                                                                                                     <  2:2136866/138‑1 (MQ=255)
              aCTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCAc                                                                                                                     >  1:2136866/1‑138 (MQ=255)
              aCTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTg                                                                                                                   >  1:921832/1‑140 (MQ=255)
               cTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTgg                                                                                                                  <  1:2202506/140‑1 (MQ=255)
               cTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTgg                                                                                                                  >  2:1485563/1‑140 (MQ=255)
                 gAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGct                                                                                                                <  2:894855/140‑1 (MQ=255)
                    acacTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCtt                                                                                                             >  1:1941043/1‑140 (MQ=255)
                         ggCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTg                                                                                                        >  1:217813/1‑140 (MQ=255)
                          gCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGc                                                                                                       <  1:1465991/140‑1 (MQ=255)
                          gCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGc                                                                                                       <  2:2389608/140‑1 (MQ=255)
                          gCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGc                                                                                                       >  2:1619449/1‑140 (MQ=255)
                           cAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGcc                                                                                                                       >  1:714145/1‑123 (MQ=255)
                           cAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGcc                                                                                                                       <  2:714145/123‑1 (MQ=255)
                              cgcTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGccccc                                                                                                   <  2:1599772/140‑1 (MQ=255)
                                    gCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCAtt                                                                                             >  1:2093504/1‑140 (MQ=255)
                                     ccAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTc                                                                                            >  1:122334/1‑140 (MQ=255)
                                     ccAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTc                                                                                            >  1:342940/1‑140 (MQ=255)
                                        gCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGc                                                                                         >  2:628025/1‑140 (MQ=255)
                                        gCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGc                                                                                         >  2:1793967/1‑140 (MQ=255)
                                             ggCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGAtt                                                                                    <  1:874412/140‑1 (MQ=255)
                                             ggCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGAtt                                                                                    <  2:371576/140‑1 (MQ=255)
                                             ggCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGAtt                                                                                    >  2:894653/1‑140 (MQ=255)
                                             ggCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGAtt                                                                                    >  2:2205231/1‑140 (MQ=255)
                                              gCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTc                                                                                   >  1:2248139/1‑140 (MQ=255)
                                               cAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCg                                                                                  <  1:1977935/140‑1 (MQ=255)
                                                aaTTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGt                                                                                 <  1:1000078/140‑1 (MQ=255)
                                                aaTTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGt                                                                                 <  2:217813/140‑1 (MQ=255)
                                                 aTTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGc                                                                                         >  2:1221397/1‑131 (MQ=255)
                                                 aTTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGc                                                                                         <  1:1221397/131‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACGCCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  2:783103/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:2205231/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:1537075/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:1619449/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:1658992/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:1836876/140‑1 (MQ=255)
                                                    ttCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTcaca                                                                             <  1:628025/140‑1 (MQ=255)
                                                     tCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACaa                                                                            <  1:132933/140‑1 (MQ=255)
                                                         cTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGt                                                                        <  1:276472/140‑1 (MQ=255)
                                                                  tACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCAtt                                                               >  2:2283942/1‑140 (MQ=255)
                                                                   aCGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTg                                                              >  1:1959441/1‑140 (MQ=255)
                                                                    cGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgg                                                             >  2:316852/1‑140 (MQ=255)
                                                                    cGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgg                                                             >  1:635817/1‑140 (MQ=255)
                                                                    cGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgg                                                             <  2:2248139/140‑1 (MQ=255)
                                                                     gTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgtg                                                            <  2:1959441/140‑3 (MQ=255)
                                                                      tGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCg                                                           >  2:2112032/1‑140 (MQ=255)
                                                                        aTAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGaa                                                         <  1:1283519/140‑1 (MQ=255)
                                                                         tAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAg                                                        >  2:2269250/1‑140 (MQ=255)
                                                                           agcagcAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgg                                                             <  1:391525/133‑1 (MQ=255)
                                                                           agcagcAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTgg                                                             >  2:391525/1‑133 (MQ=255)
                                                                           agcagcAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTa                                                      >  1:1279039/1‑140 (MQ=255)
                                                                            gcagcaAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTAc                                                     >  1:1940031/1‑140 (MQ=255)
                                                                            gcagcaAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCACTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTAc                                                     >  1:1056816/1‑140 (MQ=255)
                                                                                  aaaTATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTaa                                               <  2:635817/140‑1 (MQ=255)
                                                                                       ttCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCt                                          <  1:368237/140‑1 (MQ=255)
                                                                                           ggCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTcgcg                                      <  1:894653/140‑1 (MQ=255)
                                                                                            gCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGa                                     <  2:1618068/140‑1 (MQ=255)
                                                                                            gCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGa                                     >  1:405209/1‑140 (MQ=255)
                                                                                               tCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTcgcg                                      >  2:2373873/1‑136 (MQ=255)
                                                                                               tCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTcgcg                                      <  1:2203584/136‑1 (MQ=255)
                                                                                               tCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTcgcg                                      >  2:2203584/1‑136 (MQ=255)
                                                                                               tCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTcgcg                                      <  1:2373873/136‑1 (MQ=255)
                                                                                               tCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAg                                  >  2:476896/1‑140 (MQ=255)
                                                                                                     cATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAAt                            <  1:2112032/140‑1 (MQ=255)
                                                                                                     cATTACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAAt                            <  1:316852/140‑1 (MQ=255)
                                                                                                        tACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAg                         <  2:69570/140‑1 (MQ=255)
                                                                                                        tACACCCGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAg                         <  2:1941043/140‑1 (MQ=255)
                                                                                                             ccGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCAtt                    <  1:1182707/140‑1 (MQ=255)
                                                                                                             ccGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCAtt                    >  1:2117503/1‑140 (MQ=255)
                                                                                                              cGTAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCAttt                   >  2:127113/1‑140 (MQ=255)
                                                                                                                tAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCa                      <  1:148650/135‑1 (MQ=255)
                                                                                                                tAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCa                      >  2:148650/1‑135 (MQ=255)
                                                                                                                tAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTa                 >  2:10339/1‑140 (MQ=255)
                                                                                                                tAAGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTa                 >  2:1205435/1‑140 (MQ=255)
                                                                                                                 aaGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTAt                >  2:1855397/1‑140 (MQ=255)
                                                                                                                 aaGGATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTAt                <  2:1118188/140‑1 (MQ=255)
                                                                                                                    gATCCAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTg             >  1:1743974/1‑140 (MQ=255)
                                                                                                                       ccAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGtt          >  1:1492636/1‑140 (MQ=255)
                                                                                                                       ccAGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGtt          >  2:440252/1‑140 (MQ=255)
                                                                                                                         aGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGtttt        >  2:1917082/1‑140 (MQ=255)
                                                                                                                         aGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGtttt        >  2:1457651/1‑140 (MQ=255)
                                                                                                                         aGGCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTAATCTGGtttt        >  1:1649069/1‑140 (MQ=255)
                                                                                                                          ggCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtc       >  1:2249173/1‑140 (MQ=255)
                                                                                                                          ggCGATACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtc       <  1:366489/140‑1 (MQ=255)
                                                                                                                              aTACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATc               >  1:1426756/1‑128 (MQ=255)
                                                                                                                              aTACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATc               <  2:1426756/128‑1 (MQ=255)
                                                                                                                              aTACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctc   <  1:816520/140‑1 (MQ=255)
                                                                                                                              aTACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctc   >  1:1500575/1‑140 (MQ=255)
                                                                                                                               tACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctcg  >  1:2221481/1‑140 (MQ=255)
                                                                                                                               tACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctcg  <  1:2283942/140‑1 (MQ=255)
                                                                                                                               tACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctcg  >  2:1715042/1‑140 (MQ=255)
                                                                                                                               tACTTCCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTtcgctcg  <  2:2172356/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                      
ATGGCCCTGCAGCAACTGAAACACTGGCAGCGCTGGGCCAGCAAGGGCAATTTTCAACTGCAGAAGTACGTGATAAGCAGCAAAATATTCTGGCATCCTGGCATTACACCCGTAAGGATCCAGGCGATACTTTCAGTAATTTCATAAGCCACTGGCTCTTCCCTGCCCCCATCATTCAGCCGATTCGTCACAATGGTGAAACCATTGGCGAAGTACGCTTAACCGCTCGCGACAGTTCAATCAGCCATTTTATCTGGTTTTCGCTCG  >  NC_000913/2742597‑2742863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A