Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,757,662 |
(T)8→9 |
coding (939/957 nt) |
yfjH ← |
CP4‑57 prophage; protein YfjH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,757,654 | 1 | . | T | 96.4%
| 391.3
/ 4.5
| 112 | coding (947/957 nt) | yfjH | CP4‑57 prophage; protein YfjH |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base T (70/38); total (72/40) |
| Fisher's exact test for biased strand distribution p-value = 6.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
Only 100 of 120 total aligned reads displayed.
ATTTCACTGTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGATTATTT > NC_000913/2757515‑2757788
|
aTTTCACTGTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTActtc > 2:2268035/1‑140 (MQ=255)
tttCACTGTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTActtc‑t > 1:14034/1‑140 (MQ=255)
cTGTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑tttttt < 1:850804/140‑1 (MQ=255)
gTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑tttttttt < 2:900847/140‑1 (MQ=255)
tGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑tttttttttct > 2:1449949/1‑137 (MQ=255)
cTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACg < 1:2076250/140‑1 (MQ=255)
tGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACg < 2:148909/139‑1 (MQ=255)
tGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACg > 1:148909/1‑139 (MQ=255)
tGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGa > 2:414842/1‑140 (MQ=255)
cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAAc > 2:84917/1‑140 (MQ=255)
cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAAc > 1:457329/1‑140 (MQ=255)
cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAAc > 2:1881003/1‑140 (MQ=255)
cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAAc > 2:182198/1‑140 (MQ=255)
cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAAc > 2:532726/1‑140 (MQ=255)
cAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAg > 1:1300467/1‑140 (MQ=255)
cAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAg > 1:2030186/1‑140 (MQ=255)
cAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAg > 2:527921/1‑140 (MQ=255)
gTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAgcg < 1:1917859/140‑1 (MQ=255)
tCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAgcgc > 2:628231/1‑140 (MQ=255)
tCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAgcgc < 2:1440117/140‑1 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGaa < 2:1559187/124‑1 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGaa > 1:1559187/1‑124 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAg > 1:345638/1‑139 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAg < 2:345638/139‑1 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGc > 2:2320903/1‑140 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGc < 1:527921/140‑1 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGc > 2:1035152/1‑140 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGc < 1:182198/140‑1 (MQ=255)
tgtgGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGc > 2:615333/1‑140 (MQ=255)
gtgtTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGttt < 1:1102433/140‑1 (MQ=255)
tgtTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGtttt > 1:1948177/1‑140 (MQ=255)
gtTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTa < 2:1948177/140‑1 (MQ=255)
gtTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTa > 1:892142/1‑140 (MQ=255)
cTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATc > 1:2258070/1‑140 (MQ=255)
tttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAt > 2:346421/1‑140 (MQ=255)
tttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAt < 2:409456/140‑1 (MQ=255)
tttGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAt < 2:2030186/140‑1 (MQ=255)
cAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAttttt > 2:1736247/1‑140 (MQ=255)
aCTTGTCAATAAATAGAAAGTCTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCa < 1:1736345/140‑1 (MQ=255)
cTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 2:740403/140‑1 (MQ=255)
cTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 2:2258070/140‑1 (MQ=255)
cTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 1:615333/140‑1 (MQ=255)
gTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGa > 1:1310734/1‑140 (MQ=255)
gTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAt > 1:1150351/1‑140 (MQ=255)
aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAttt > 2:1656033/1‑140 (MQ=255)
aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAttt > 1:2220665/1‑140 (MQ=255)
ataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 1:1299534/133‑1 (MQ=255)
ataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt > 2:1299534/1‑133 (MQ=255)
aataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaaaa < 1:1035152/140‑1 (MQ=255)
aataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACCTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaaaa < 1:1100369/140‑1 (MQ=255)
aGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAg > 1:2359898/1‑140 (MQ=255)
aaaGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTa < 1:532726/140‑1 (MQ=255)
gtAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTAAAAATAGTATCAAc > 2:1734096/1‑140 (MQ=255)
aGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt > 1:1670681/1‑123 (MQ=255)
aGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt < 2:1670681/123‑1 (MQ=255)
aTGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAg < 2:1150351/140‑1 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCa > 1:1159478/1‑138 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 1:2380156/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 2:1367327/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 2:1070965/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 1:2226858/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 1:304278/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 2:37998/1‑140 (MQ=255)
ttAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATc > 2:375309/1‑140 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAg > 2:232829/1‑131 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAg < 1:232829/131‑1 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGAc > 1:342224/1‑140 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGAc > 1:4034/1‑140 (MQ=255)
cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACt > 1:379420/1‑140 (MQ=255)
gcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACt < 2:457329/140‑1 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGa < 2:2317277/136‑1 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCa > 1:655081/1‑140 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCa > 1:1997310/1‑140 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCa > 1:914887/1‑140 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCa < 1:1459858/140‑1 (MQ=255)
aGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCa > 2:1669836/1‑140 (MQ=255)
gCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCAt < 1:37998/140‑1 (MQ=255)
tATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCAttgt < 2:379420/140‑1 (MQ=255)
cTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTaca < 2:1142970/140‑1 (MQ=255)
cTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTAAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTaca < 1:1734096/140‑1 (MQ=255)
tataTGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTacac > 2:39810/1‑140 (MQ=255)
atGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGat > 1:2010006/1‑140 (MQ=255)
atGGCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGat > 1:1182206/1‑140 (MQ=255)
ggCAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGatat > 2:2001477/1‑140 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCAt > 2:1997659/1‑122 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCAt < 1:1997659/122‑1 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAttt > 2:718129/1‑140 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAttt > 2:1598141/1‑140 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAttt > 2:446800/1‑140 (MQ=255)
cAAGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAttt > 1:866017/1‑140 (MQ=255)
aaGTAGTAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAtttt > 2:798165/1‑140 (MQ=255)
agtagtAATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAttttt > 1:2389250/1‑140 (MQ=255)
gtagtaATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATAtttttt > 1:172561/1‑140 (MQ=255)
gtaATTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTAtt < 1:1881003/140‑1 (MQ=255)
aaTTATTTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTAtttt < 2:2010006/140‑1 (MQ=255)
attTACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGatt > 1:986901/1‑140 (MQ=255)
ttACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGattat < 2:172561/140‑1 (MQ=255)
tACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGattatt > 2:649612/1‑140 (MQ=255)
tACTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGattatt < 1:1669836/140‑1 (MQ=255)
aCTTCTTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGAttattt < 1:798165/140‑1 (MQ=255)
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ATTTCACTGTATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGATTATTT > NC_000913/2757515‑2757788
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
