Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,762,513 A→G V343A (GTC→GCC)  abpB ← CP4‑57 prophage; putative helicase YfjK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,762,5130AG100.0% 241.7 / NA 66V343A (GTC→GCC) abpBCP4‑57 prophage; putative helicase YfjK
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (29/37);  total (29/37)

CAAAAAGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGACCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTCCCCCAG  >  NC_000913/2762377‑2762649
                                                                                                                                        |                                                                                                                                        
cAAAAAGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGccc                                                                                                                                       >  2:262070/1‑140 (MQ=255)
   aaaGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGt                                                                                                                                    >  1:627503/1‑140 (MQ=255)
   aaaGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGt                                                                                                                                    <  2:56701/140‑1 (MQ=255)
   aaaGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGt                                                                                                                                    <  1:262070/140‑1 (MQ=255)
   aaaGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGt                                                                                                                                    <  2:1314336/140‑1 (MQ=255)
      gcgcAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGa                                                                                                                                 <  1:743440/140‑1 (MQ=255)
       cgcAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGAc                                                                                                                                <  2:92678/140‑1 (MQ=255)
          aGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATg                                                                                                                             >  1:593472/1‑140 (MQ=255)
                     aTTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAg                                                                                                                  <  2:1361967/140‑1 (MQ=255)
                      ttGAATTGGTCGGCAGGGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGt                                                                                                                 >  2:1058594/1‑140 (MQ=255)
                         aaTTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCgg                                                                                                              <  1:936702/140‑1 (MQ=255)
                          aTTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGa                                                                                                             <  1:490802/140‑1 (MQ=255)
                             ggTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTg                                                                                                          <  1:615566/140‑1 (MQ=255)
                               tCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGcc                                                                                                        <  2:102388/140‑1 (MQ=255)
                               tCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGcc                                                                                                        <  1:815638/140‑1 (MQ=255)
                                    aGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGcc                                                                                                   <  1:457317/140‑1 (MQ=255)
                                    aGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGcc                                                                                                   <  1:979560/140‑1 (MQ=255)
                                    aGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGcc                                                                                                   <  1:540099/140‑1 (MQ=255)
                                    aGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGcc                                                                                                   <  2:133857/140‑1 (MQ=255)
                                    aGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGcc                                                                                                   <  1:5633/140‑1 (MQ=255)
                                             ctgcAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGa                                                                                          >  2:576939/1‑140 (MQ=255)
                                                cAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCa                                                                                       >  2:1038848/1‑140 (MQ=255)
                                                cAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCa                                                                                       >  2:133858/1‑140 (MQ=255)
                                                cAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCa                                                                                       >  2:407948/1‑140 (MQ=255)
                                                cAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCa                                                                                       >  1:1078649/1‑140 (MQ=255)
                                                  gTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGc                                                                                     >  2:600336/1‑140 (MQ=255)
                                                     cccTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTcg                                                                                  >  1:150421/1‑140 (MQ=255)
                                                     cccTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTcg                                                                                  >  1:129195/1‑140 (MQ=255)
                                                       cTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTcgcg                                                                                <  1:1058594/140‑1 (MQ=255)
                                                        tCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTcgcgc                                                                               <  2:1138832/140‑1 (MQ=255)
                                                                 cgcCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAgg                                                                      >  1:620164/1‑140 (MQ=255)
                                                                 cgcCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAgg                                                                      <  2:406686/140‑1 (MQ=255)
                                                                 cgcCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGCAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAgg                                                                      >  1:556187/1‑140 (MQ=255)
                                                                           cAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAg                                                            >  1:364854/1‑140 (MQ=255)
                                                                                cAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGt                                                       <  1:889651/140‑1 (MQ=255)
                                                                                  aTACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGa                                                     <  2:593472/140‑1 (MQ=255)
                                                                                   tACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGAc                                                    <  1:483991/140‑1 (MQ=255)
                                                                                   tACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTACCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGAc                                                    <  1:1269048/140‑1 (MQ=255)
                                                                                   tACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAAATCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGACCGCAACAGTTGGTGAc                                                    >  2:1259935/1‑140 (MQ=255)
                                                                                    aCCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACt                                                   <  2:150421/140‑1 (MQ=255)
                                                                                      cGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTg                                                 <  2:946272/140‑1 (MQ=255)
                                                                                       gTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCACGCCACCAGGCCCGCAACAGTTGGTGACTTGc                                                <  2:1349098/140‑1 (MQ=255)
                                                                                        tttCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCa                                               >  2:341616/1‑140 (MQ=255)
                                                                                        tttCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCa                                               >  1:196861/1‑140 (MQ=255)
                                                                                        tttCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCa                                               >  2:595477/1‑140 (MQ=255)
                                                                                        tttCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCa                                               <  1:600336/140‑1 (MQ=255)
                                                                                             aaGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATaaa                                          >  1:1124628/1‑140 (MQ=255)
                                                                                              aGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAAt                                         <  2:1078649/140‑1 (MQ=255)
                                                                                                    aCTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGCGACTTGCAATAAATGATCGt                                   >  2:399528/1‑140 (MQ=255)
                                                                                                     cTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGtt                                  <  1:595477/140‑1 (MQ=255)
                                                                                                     cTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGtt                                  <  1:407948/140‑1 (MQ=255)
                                                                                                                 aGTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAt                      <  1:794416/140‑1 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtg                     >  2:360860/1‑140 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtg                     >  2:593871/1‑140 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtg                     >  2:1191690/1‑140 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtg                     >  1:1153660/1‑140 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCACGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtc                     >  1:45291/1‑139 (MQ=255)
                                                                                                                  gTCGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGCGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCACCAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtg                     >  1:907524/1‑140 (MQ=255)
                                                                                                                    cGGCATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtgcg                   >  1:523485/1‑140 (MQ=255)
                                                                                                                       cATCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtgcgtgc                <  2:393091/140‑1 (MQ=255)
                                                                                                                        aTCGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACAtgcgtgcg               <  2:129195/140‑1 (MQ=255)
                                                                                                                          cGAACTCTTCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGcgcg             >  1:568699/1‑140 (MQ=255)
                                                                                                                                  tCGCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTcccc     <  2:364854/140‑1 (MQ=255)
                                                                                                                                    gCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTCCCCCa   <  2:392338/140‑1 (MQ=255)
                                                                                                                                    gCTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTCCCCCa   <  1:763528/140‑1 (MQ=255)
                                                                                                                                     cTGGCCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTCCCCCAg  <  1:360860/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CAAAAAGCGCAGTTTTCCAGCATTGAATTGGTCGGCAGTGTATTGCTGCAGTGCCCTCGGTAGCGCGCCAAAATGCAAGCCAATACCGTTTCTAAGGGCGACTGTGTAATCCCAGTCGGCATCGAACTCTTCGCTGACCCAGTCGACATGGGGATTCTCAGTCGGAGTGCCATGCCCAAGCCTGATCAGCTCGCGCGCCACCAGGCCCGCAACAGTTGGTGACTTGCAATAAATGATCGTTGCGTCGACACATGCGTGCGCGATTTCCCCCAG  >  NC_000913/2762377‑2762649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A