Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,809,002	A→G	pseudogene (687/1178 nt)	ygaY →	putative transporter YgaY, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,809,002	0	A	G	100.0%	474.5 / NA	131	pseudogene (687/1178 nt)	ygaY	putative transporter YgaY, N‑terminal fragment
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (72/59); total (72/59)

Only 100 of 131 total aligned reads displayed.

CAAATGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGACCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCA  >  NC_000913/2808867‑2809138

caAATGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTc                                                                                                                                      >  1:1751276/1‑140 (MQ=255)

caAATGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTc                                                                                                                                      >  1:16390/1‑140 (MQ=255)

  aaTGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCaa                                                                                                                                    <  1:1126793/140‑1 (MQ=255)

  aaTGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCaa                                                                                                                                    >  1:765154/1‑140 (MQ=255)

  aaTGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCaa                                                                                                                                    >  2:16114/1‑140 (MQ=255)

   aTGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAAt                                                                                                                                   <  2:1454450/140‑1 (MQ=255)

   aTGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAAt                                                                                                                                   <  2:765154/140‑1 (MQ=255)

       aaTCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCaa                                                                                                                                    >  2:1581855/1‑135 (MQ=255)

       aaTCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCaa                                                                                                                                    <  1:1581855/135‑1 (MQ=255)

        aTCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCt                                                                                                                              >  2:1663468/1‑140 (MQ=255)

             aaaCCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTttg                                                                                                                         >  1:472746/1‑140 (MQ=255)

                cccACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTttgctt                                                                                                                      >  1:129572/1‑140 (MQ=255)

                cccACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGCGCCTCAATGGCCTTTttgctt                                                                                                                      <  2:1706098/140‑1 (MQ=255)

                 ccACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTttgcttg                                                                                                                     <  2:1751276/140‑1 (MQ=255)

                   aCCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGcc                                                                                                                   >  2:1981736/1‑140 (MQ=255)

                    ccTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCg                                                                                                                  >  1:1644833/1‑140 (MQ=255)

                       cAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTc                                                                                                               <  2:129572/140‑1 (MQ=255)

                       cAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTc                                                                                                               <  1:76809/140‑1 (MQ=255)

                       cAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTc                                                                                                               <  1:713716/140‑1 (MQ=255)

                       cAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTAACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTc                                                                                                               <  2:232139/140‑1 (MQ=255)

                         aCTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCa                                                                                                             >  2:767028/1‑140 (MQ=255)

                          cTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCAc                                                                                                            >  2:1299781/1‑140 (MQ=255)

                          cTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCAc                                                                                                            <  1:811722/140‑1 (MQ=255)

                          cTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCAc                                                                                                            <  1:551673/140‑1 (MQ=255)

                           tACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCAcc                                                                                                           >  1:532325/1‑140 (MQ=255)

                             cccACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCtt                                                                                                         >  2:947255/1‑140 (MQ=255)

                               cacaGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCg                                                                                                                  >  1:2201403/1‑129 (MQ=255)

                               cacaGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCg                                                                                                                  <  2:2201403/129‑1 (MQ=255)

                               cacaGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCtttt                                                                                                       <  1:524455/140‑1 (MQ=255)

                                acaGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTa                                                                                                      >  2:2245597/1‑140 (MQ=255)

                                  aGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAAc                                                                                                    >  2:1976100/1‑140 (MQ=255)

                                  aGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAAc                                                                                                    <  1:1976100/140‑1 (MQ=255)

                                  aGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAAc                                                                                                    >  2:744088/1‑140 (MQ=255)

                                    ttgttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCtttt                                                                                                       >  2:1959557/1‑135 (MQ=255)

                                    ttgttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCtttt                                                                                                       <  1:1959557/135‑1 (MQ=255)

                                    ttgttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTa                                                                                                  >  1:144239/1‑140 (MQ=255)

                                     tgttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTAc                                                                                                 >  1:83695/1‑140 (MQ=255)

                                      gttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACa                                                                                                <  1:744088/140‑1 (MQ=255)

                                       ttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCAc                                                                                                            <  1:123554/127‑1 (MQ=255)

                                       ttgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAg                                                                                               >  1:577615/1‑140 (MQ=255)

                                        tgGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGc                                                                                              >  2:1093893/1‑140 (MQ=255)

                                         gggTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCg                                                                                             <  1:1858892/140‑1 (MQ=255)

                                         gggTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCg                                                                                             <  2:864749/140‑1 (MQ=255)

                                            ttCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATg                                                                                          >  1:1912470/1‑140 (MQ=255)

                                             tCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATgg                                                                                         <  2:625343/140‑1 (MQ=255)

                                             tCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATgg                                                                                         <  2:83695/140‑1 (MQ=255)

                                              ccGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGgt                                                                                        >  1:958737/1‑140 (MQ=255)

                                                    tCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCAtt                                                                                  >  1:2145298/1‑140 (MQ=255)

                                                     cAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAATTACAGCGATGGTGTCATTg                                                                                 <  2:2043337/140‑1 (MQ=255)

                                                      aGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATgg                                                                                         >  1:254168/1‑131 (MQ=255)

                                                      aGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATgg                                                                                         <  2:254168/131‑1 (MQ=255)

                                                      aGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTgg                                                                                <  1:2400248/140‑1 (MQ=255)

                                                      aGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTgg                                                                                <  1:2016832/140‑1 (MQ=255)

                                                      aGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTgg                                                                                <  1:1332448/140‑1 (MQ=255)

                                                       gTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGt                                                                               <  2:87326/140‑1 (MQ=255)

                                                       gTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGt                                                                               <  2:1912470/140‑1 (MQ=255)

                                                       gTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGt                                                                               <  2:1764300/140‑1 (MQ=255)

                                                       gTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGt                                                                               <  2:1555236/140‑1 (MQ=255)

                                                           gTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGt                                                                           <  1:1093893/140‑1 (MQ=255)

                                                           gTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGt                                                                           >  1:2137551/1‑140 (MQ=255)

                                                           gTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGt                                                                           >  1:383576/1‑140 (MQ=255)

                                                              tATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTg                                                                        >  2:167088/1‑140 (MQ=255)

                                                                tCAGCGATAAAATTCTGTGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGTTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGa                                                                      <  2:2144175/140‑1 (MQ=255)

                                                                tCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGa                                                                      >  2:37776/1‑140 (MQ=255)

                                                                tCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGa                                                                      <  1:2113005/140‑1 (MQ=255)

                                                                tCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGa                                                                      >  2:581082/1‑140 (MQ=255)

                                                                tCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGa                                                                      <  1:113896/140‑1 (MQ=255)

                                                                  aGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACt                                                                    >  2:2368720/1‑140 (MQ=255)

                                                                    cGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTg                                                                        <  2:439630/134‑1 (MQ=255)

                                                                    cGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTg                                                                        >  1:439630/1‑134 (MQ=255)

                                                                    cGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTg                                                                  >  2:2161137/1‑140 (MQ=255)

                                                                    cGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTg                                                                  >  1:1619076/1‑140 (MQ=255)

                                                                    cGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTACCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTg                                                                  >  1:747685/1‑140 (MQ=255)

                                                                      aTAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACTTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCg                                                                >  2:814549/1‑140 (MQ=255)

                                                                      aTAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCg                                                                <  1:2226927/140‑1 (MQ=255)

                                                                      aTAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCg                                                                >  2:656572/1‑140 (MQ=255)

                                                                      aTAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCAGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCg                                                                <  2:1023497/140‑1 (MQ=255)

                                                                                 cGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCgg                                                     <  2:549512/140‑1 (MQ=255)

                                                                                 cGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCgg                                                     >  1:17960/1‑140 (MQ=255)

                                                                                 cGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCgg                                                     >  2:2274086/1‑140 (MQ=255)

                                                                                    aCCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGCGTCATTGGTCTGTTTGGACTTGCGGGAGCGGCCGgcgc                                                  >  2:2245038/1‑140 (MQ=255)

                                                                                           cgTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGgc                                           >  1:1238277/1‑140 (MQ=255)

                                                                                                        ccTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcgg                              >  2:45484/1‑140 (MQ=255)

                                                                                                        ccTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcgg                              >  1:1178753/1‑140 (MQ=255)

                                                                                                        ccTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcgg                              >  2:360628/1‑140 (MQ=255)

                                                                                                        ccTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCcggcgg                              >  2:2366513/1‑140 (MQ=255)

                                                                                                         cTGACCTTTGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCggcggg                             <  1:2368720/140‑1 (MQ=255)

                                                                                                                 tGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTg                     <  1:2366513/140‑1 (MQ=255)

                                                                                                                 tGCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTg                     >  2:1641441/1‑140 (MQ=255)

                                                                                                                  gCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGgcgggcgg                          >  2:1300533/1‑134 (MQ=255)

                                                                                                                  gCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGgcgggcgg                          <  1:1300533/134‑1 (MQ=255)

                                                                                                                  gCCAATTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGc                    >  1:153032/1‑140 (MQ=255)

                                                                                                                      aTTTCAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGAt                >  2:603283/1‑140 (MQ=255)

                                                                                                                          cAGCATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAgg            <  1:1704925/140‑1 (MQ=255)

                                                                                                                             cATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCa         <  1:37776/140‑1 (MQ=255)

                                                                                                                             cATTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACCACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCa         <  1:399043/140‑1 (MQ=255)

                                                                                                                             cATTCTCTGGGCCTCAACGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGCGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCa         <  2:2145298/140‑1 (MQ=255)

                                                                                                                              aTTCTCTGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCaa        >  2:2087233/1‑140 (MQ=255)

                                                                                                                                  tctGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCg    >  2:830729/1‑140 (MQ=255)

                                                                                                                                  tctGGGCCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCg    >  1:2171116/1‑140 (MQ=255)

CAAATGAAATCAGAAACCCACCTCAACTACCCACAGTTGTTGGGTTCCGTTTTCAGTATGTTTATCAGCGATAAAATTCTGCGTACCCGCGCGTTGCTGGGCTGCCTGACCTTTGCCAATTTCAGCATTCTCTGGACCTCAATGGCCTTTTTGCTTGCCGCTCCACCTTTTAACTACAGCGATGGTGTCATTGGTCTGTTTGGACTTGCGGGAGCTGCCGGAGCGTTGGGCGCTCGTCCGGCGGGCGGTTTTGCCGATAAGGGCAAATCGCA  >  NC_000913/2808867‑2809138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A