Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,835,963	T→C	Q488R (CAG→CGG)	hypF ←	carbamoyltransferase HypF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,835,963	0	T	C	100.0%	419.5 / NA	118	Q488R (CAG→CGG)	hypF	carbamoyltransferase HypF
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (64/54); total (64/54)

Only 100 of 121 total aligned reads displayed.

GCAGGCAAGCCGCCCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAA  >  NC_000913/2835828‑2836097

gCAGGCAAGCCGCCCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATg                                                                                                                                    <  1:1048503/140‑1 (MQ=255)

gCAGGCAAGCCGCCCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATg                                                                                                                                    <  1:549522/140‑1 (MQ=255)

     cAAGCCGCCCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTg                                                                                                                               <  2:845007/140‑1 (MQ=255)

         ccgccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATg                                                                                                                                    <  1:105388/131‑1 (MQ=255)

         ccgccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAg                                                                                                                           >  2:2261849/1‑140 (MQ=255)

         ccgccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAg                                                                                                                           >  1:823020/1‑140 (MQ=255)

         ccgccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAg                                                                                                                           >  1:224277/1‑140 (MQ=255)

          cgccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGa                                                                                                                          <  1:1620906/140‑1 (MQ=255)

           gccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGct                                                                                                                                  <  2:667291/131‑1 (MQ=255)

           gccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGac                                                                                                                         >  2:1097916/1‑140 (MQ=255)

           gccCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGac                                                                                                                         >  1:2264145/1‑140 (MQ=255)

              cAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACAcg                                                                                                                      >  1:1927746/1‑140 (MQ=255)

               aGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACAcgc                                                                                                                     <  1:65253/140‑1 (MQ=255)

                ggTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACAcgcc                                                                                                                    <  2:224277/140‑1 (MQ=255)

                ggTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACAcgcc                                                                                                                    >  1:2224294/1‑140 (MQ=255)

                    cTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTg                                                                                                                >  1:419362/1‑140 (MQ=255)

                     tCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGc                                                                                                               <  1:1809819/140‑1 (MQ=255)

                           tCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGTTCTGCCAGACACGCCGCTGCATGGGc                                                                                                         >  1:1829752/1‑140 (MQ=255)

                           tCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGc                                                                                                         >  2:2098709/1‑140 (MQ=255)

                            cgcgATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCa                                                                                                        <  2:2112576/140‑1 (MQ=255)

                               gATAGTTCACCCGCAGGCCCTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGGGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatga                                                                                                     <  2:503845/140‑1 (MQ=255)

                               gATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatga                                                                                                     <  1:2261849/140‑1 (MQ=255)

                               gATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatga                                                                                                     <  2:2224294/140‑1 (MQ=255)

                               gATAGTCCCCCCGCAGCCACTCGCCCCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatga                                                                                                     <  2:1393978/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  1:57523/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  1:2098709/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  1:2229972/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  2:652466/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   >  2:244345/1‑140 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  1:2292102/140‑1 (MQ=255)

                                 tAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  2:1195559/140‑1 (MQ=255)

                                 tAGTTCACCCCCAGGCACCCGCCGCCCCACAAAGCGCGGTTCCCCCCCATCCCGATACCGTCGGGCGTCAAAGCAATGACATCCCCGCCAACCAGCGCCCCCCGAGGCTCTGCCAGACACGCCGCTGCATGGGCatgatg                                                                                                   <  2:396758/140‑1 (MQ=255)

                                    ttCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCatgatgatg                                                                                                <  2:1056267/140‑1 (MQ=255)

                                     tCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAATCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGc                                                                                               <  2:1677571/140‑1 (MQ=255)

                                             aGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGt                                                                                       >  2:483174/1‑140 (MQ=255)

                                              ggCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGtt                                                                                      >  1:1986526/1‑140 (MQ=255)

                                                   tCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGt                                                                                 >  2:834453/1‑140 (MQ=255)

                                                     gccgccCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGGCACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCg                                                                               >  1:1318929/1‑140 (MQ=255)

                                                     gccgccCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCg                                                                               <  2:28132/140‑1 (MQ=255)

                                                     gccgccCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCg                                                                               >  1:78679/1‑140 (MQ=255)

                                                      ccgccCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGTTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCgg                                                                              <  2:1829752/140‑1 (MQ=255)

                                                       cgccCCACAAAGCGCCGTTCT‑CCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCa                                                                            >  1:1233931/1‑140 (MQ=255)

                                                         ccccACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAg                                                                           <  2:419362/140‑1 (MQ=255)

                                                         ccccACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAg                                                                           >  1:931369/1‑140 (MQ=255)

                                                         ccccACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAg                                                                           >  2:806486/1‑140 (MQ=255)

                                                                 aGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCAttt                                                                   >  1:1561174/1‑140 (MQ=255)

                                                                   cgcCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCa                                                                 >  2:156712/1‑140 (MQ=255)

                                                                     ccGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCAcg                                                               <  1:483174/140‑1 (MQ=255)

                                                                     ccGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCAcg                                                               >  1:1252282/1‑140 (MQ=255)

                                                                      cGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGGCACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCAcgc                                                              <  2:1318929/140‑1 (MQ=255)

                                                                        ttCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACgcgc                                                            >  2:1358774/1‑140 (MQ=255)

                                                                         tctcCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGcc                                                           >  2:1501909/1‑140 (MQ=255)

                                                                           tcCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCa                                                         <  2:78679/140‑1 (MQ=255)

                                                                                 ataccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggct                                                   >  1:302261/1‑140 (MQ=255)

                                                                                  taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggctg                                                  >  2:38956/1‑140 (MQ=255)

                                                                                  taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggctg                                                  >  2:2330478/1‑140 (MQ=255)

                                                                                  taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggctg                                                  >  2:1867481/1‑140 (MQ=255)

                                                                                   accgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggctgg                                                 >  1:2315770/1‑140 (MQ=255)

                                                                                     cgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGgag                                               >  2:2385225/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGGATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  2:1490836/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1897000/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1072661/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  2:1481428/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  2:1097396/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1007852/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:477433/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:301101/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1749952/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:2215024/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1829512/1‑140 (MQ=255)

                                                                                       ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAc                                             >  1:1887437/1‑140 (MQ=255)

                                                                                        taccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACa                                            <  2:432303/140‑1 (MQ=255)

                                                                                        taccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACa                                            <  1:806486/140‑1 (MQ=255)

                                                                                        taccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACa                                            <  1:2330478/140‑1 (MQ=255)

                                                                                          ccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATa                                          >  1:369250/1‑140 (MQ=255)

                                                                                            gTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGc                                        >  1:667838/1‑140 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAggc                                       >  1:402972/1‑138 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGcc                                       >  1:408400/1‑140 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGcc                                       >  1:2357934/1‑140 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGcc                                       >  1:2411268/1‑140 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGcc                                       <  2:2357934/140‑1 (MQ=255)

                                                                                             tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGcc                                       >  2:911542/1‑140 (MQ=255)

                                                                                                  cGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGAt                                  >  1:1203036/1‑140 (MQ=255)

                                                                                                  cGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGAt                                  <  2:1252282/140‑1 (MQ=255)

                                                                                                  cGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGAt                                  <  2:1561174/140‑1 (MQ=255)

                                                                                                    tCAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATgc                                <  2:189048/140‑1 (MQ=255)

                                                                                                     cAAAGCAATGACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATgcg                               <  1:156712/140‑1 (MQ=255)

                                                                                                              gACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGca                      <  2:1233931/140‑1 (MQ=255)

                                                                                                              gACATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGca                      <  2:921837/140‑1 (MQ=255)

                                                                                                               aCATCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGcac                     <  2:408400/140‑1 (MQ=255)

                                                                                                                 aTCACCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACaa                   >  1:2386316/1‑140 (MQ=255)

                                                                                                                    aCCGCCATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGt                >  2:54895/1‑140 (MQ=255)

                                                                                                                        ccATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTg            <  1:1490836/140‑1 (MQ=255)

                                                                                                                        ccATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTg            <  2:302261/140‑1 (MQ=255)

                                                                                                                        ccATCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTg            <  2:2315770/140‑1 (MQ=255)

                                                                                                                           tCCAGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCgg         >  2:1843874/1‑140 (MQ=255)

                                                                                                                              aGCGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGt      <  1:1501909/140‑1 (MQ=255)

                                                                                                                                cGGCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTaa    >  1:1898486/1‑140 (MQ=255)

                                                                                                                                  gCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTaaaa  >  1:136772/1‑140 (MQ=255)

                                                                                                                                  gCCACCGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGAATTGCGGGGTaaaa  <  1:1097916/140‑1 (MQ=255)

GCAGGCAAGCCGCCCAGGTGCTCACATTCGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAA  >  NC_000913/2835828‑2836097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A