Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,837,711 T→C D132G (GAC→GGC)  hydN ← putative electron transport protein HydN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,837,7110TC100.0% 411.2 / NA 114D132G (GAC→GGC) hydNputative electron transport protein HydN
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (70/44);  total (70/44)

Only 100 of 115 total aligned reads displayed.

TCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGTCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAACGTT  >  NC_000913/2837586‑2837846
                                                                                                                             |                                                                                                                                       
tCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCt                                                                                                                           <  2:543360/140‑1 (MQ=255)
    cgcCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCgg                                                                                                                       >  2:433235/1‑140 (MQ=255)
          aCGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGt                                                                                                                 <  1:558674/140‑1 (MQ=255)
          aCGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGt                                                                                                                 <  1:41386/140‑1 (MQ=255)
           cggcggCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGt                                                                                                                 >  2:1850410/1‑139 (MQ=255)
             gcggcgTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAg                                                                                                              <  1:509759/140‑1 (MQ=255)
             gcggcgTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAg                                                                                                              <  1:228090/140‑1 (MQ=255)
                 cgTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCg                                                                                                          <  2:2521/140‑1 (MQ=255)
                 cgTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCg                                                                                                          >  2:424921/1‑140 (MQ=255)
                 cgTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCg                                                                                                          >  1:1563235/1‑140 (MQ=255)
                  gTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGt                                                                                                         <  2:1364476/140‑1 (MQ=255)
                          gcgcTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAg                                                                                                 >  2:847905/1‑140 (MQ=255)
                                aGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGAcc                                                                                              >  2:130705/1‑137 (MQ=255)
                                aGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGAcc                                                                                              <  1:130705/137‑1 (MQ=255)
                                aGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCcgc                                                                                           >  2:1145502/1‑140 (MQ=255)
                                aGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCcgc                                                                                           >  1:1836381/1‑140 (MQ=255)
                                          gTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTg                                                                                 >  2:364157/1‑140 (MQ=255)
                                          gTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTg                                                                                 >  1:1583848/1‑140 (MQ=255)
                                          gTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTg                                                                                 >  2:1411104/1‑140 (MQ=255)
                                            ttattaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCg                                                                               <  1:2110802/140‑1 (MQ=255)
                                            ttattaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCg                                                                               >  1:1324187/1‑140 (MQ=255)
                                            ttattaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCg                                                                               <  1:433235/140‑1 (MQ=255)
                                              attaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCG‑‑‑CGCTGTTGCGGATCa                                                                          >  2:932280/1‑140 (MQ=255)
                                               ttaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGAt                                                                            >  1:212429/1‑140 (MQ=255)
                                               ttaCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGAt                                                                            >  1:1431905/1‑140 (MQ=255)
                                                taCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATc                                                                           <  2:1659404/140‑1 (MQ=255)
                                                taCGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATc                                                                           >  1:2255088/1‑140 (MQ=255)
                                                  cGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCAc                                                                         <  2:1377627/140‑1 (MQ=255)
                                                   gATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCAcc                                                                        <  1:1463905/140‑1 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGcgccgc                                                                                      >  1:1513052/1‑125 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGcgccgc                                                                                      <  2:1513052/125‑1 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  1:604155/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  2:656383/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  1:307192/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  1:1463158/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  2:2377342/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  1:2037048/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCg                                                                       >  1:2023938/1‑140 (MQ=255)
                                                    aTCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGC‑‑‑‑ATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACg                                                                   >  1:481064/1‑140 (MQ=255)
                                                     tCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCgg                                                                      >  2:836527/1‑140 (MQ=255)
                                                     tCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCgg                                                                      >  2:1189954/1‑140 (MQ=255)
                                                      cGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGa                                                                     <  1:1676782/140‑1 (MQ=255)
                                                         cacaAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGt                                                                  >  1:716735/1‑140 (MQ=255)
                                                          acaAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTa                                                                 <  2:1583848/140‑1 (MQ=255)
                                                              aTCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTaccac                                                             >  1:304919/1‑140 (MQ=255)
                                                              aTCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTaccac                                                             >  1:1192897/1‑140 (MQ=255)
                                                               tCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTaccacc                                                            >  2:1491660/1‑140 (MQ=255)
                                                                 aGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACcaccac                                                          >  1:1885268/1‑140 (MQ=255)
                                                                 aGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACcaccac                                                          <  2:604155/140‑1 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACATGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACtt                                                        >  2:1243664/1‑140 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACg                                                                   <  2:1800395/129‑1 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACg                                                                   >  1:1800395/1‑129 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACcaccac                                                          <  2:134926/138‑1 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACcaccac                                                          >  1:134926/1‑138 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACtt                                                        >  2:1203675/1‑140 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACtt                                                        >  1:624313/1‑140 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACtt                                                        >  1:1773203/1‑140 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCAGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACg                                                                   <  2:2230774/129‑1 (MQ=255)
                                                                   cgcATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCAGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACg                                                                   >  1:2230774/1‑129 (MQ=255)
                                                                      aTGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCACCGCTGTTGCGGATCACCGGACGTACCACCACTTCCa                                                     >  1:594468/1‑140 (MQ=255)
                                                                       tGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCAt                                                    <  2:2023938/140‑1 (MQ=255)
                                                                       tGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCAt                                                    <  1:424921/140‑1 (MQ=255)
                                                                        gAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATc                                                   >  2:1232305/1‑140 (MQ=255)
                                                                        gAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATc                                                   <  2:1463158/140‑1 (MQ=255)
                                                                         aGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCg                                                  <  2:1675836/140‑1 (MQ=255)
                                                                         aGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCg                                                  <  1:1491660/140‑1 (MQ=255)
                                                                         aGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCACCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCg                                                  <  2:594468/140‑1 (MQ=255)
                                                                           tCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCa                                                <  2:716735/140‑1 (MQ=255)
                                                                           tCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCa                                                <  1:30331/140‑1 (MQ=255)
                                                                             gggCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCa                                                <  2:1082176/138‑1 (MQ=255)
                                                                             gggCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCa                                                >  1:1082176/1‑138 (MQ=255)
                                                                               gCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCAt                                            <  1:42403/140‑1 (MQ=255)
                                                                               gCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCAt                                            <  1:1153258/140‑1 (MQ=255)
                                                                               gCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCAt                                            <  2:1192897/140‑1 (MQ=255)
                                                                                   gccgccATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGTCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACgg                                        >  1:2227284/1‑140 (MQ=255)
                                                                                   gccgccATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACgg                                        >  2:491590/1‑140 (MQ=255)
                                                                                    ccgccATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCCCCACTTCCATCGCACCATACggg                                       <  2:1836381/140‑1 (MQ=255)
                                                                                          tACATGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGcc                                 <  1:1243664/140‑1 (MQ=255)
                                                                                              cGCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACaa                             >  1:44698/1‑140 (MQ=255)
                                                                                               gCCGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCCCCACTTCCATCGCCCCATACGGGCAAGCCACAAc                            <  2:2164669/140‑1 (MQ=255)
                                                                                                 cGGGCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGc                          >  2:1020199/1‑140 (MQ=255)
                                                                                                  gggCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCa                         >  1:647174/1‑140 (MQ=255)
                                                                                                    gCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAgg                       >  2:2250835/1‑140 (MQ=255)
                                                                                                    gCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAgg                       >  1:2213387/1‑140 (MQ=255)
                                                                                                    gCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAgg                       >  1:2082460/1‑140 (MQ=255)
                                                                                                    gCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAgg                       >  1:1774692/1‑140 (MQ=255)
                                                                                                    gCCGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAgg                       >  1:2239125/1‑140 (MQ=255)
                                                                                                     ccGTCTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGt                      >  1:1858398/1‑140 (MQ=255)
                                                                                                         cTTCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTg                  >  1:2175567/1‑140 (MQ=255)
                                                                                                          ttCACGATGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGc                 <  2:1774692/140‑1 (MQ=255)
                                                                                                                aTGGTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCaa           <  2:2175567/140‑1 (MQ=255)
                                                                                                                  ggTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACg                           <  2:1722955/122‑1 (MQ=255)
                                                                                                                  ggTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACg                           >  1:1722955/1‑122 (MQ=255)
                                                                                                                   gTTGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGc        >  1:273014/1‑140 (MQ=255)
                                                                                                                    ttGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCa       >  1:828015/1‑140 (MQ=255)
                                                                                                                    ttGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCa       >  2:915386/1‑140 (MQ=255)
                                                                                                                     tGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCaa      <  2:624313/140‑1 (MQ=255)
                                                                                                                     tGCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCaa      >  2:1899890/1‑140 (MQ=255)
                                                                                                                      gCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAAc     >  1:2219091/1‑140 (MQ=255)
                                                                                                                      gCACAGGCCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAAc     >  1:2167824/1‑140 (MQ=255)
                                                                                                                             |                                                                                                                                       
TCAGCGCCGTACGGCGGCGTTTTTCTGCGCTCAGTTGTTCAAGTTTATTACGATCGACACAAATCAGCGCATGAGTCGGGCAAGCCGCCATACACGCCGGGCCGTCTTCACGATGGTTGCACAGGTCGCATTTATTGGCTTCGGCTTTGTCAGCCCGTACATTCAGACCCGCGCCGCTGTTGCGGATCACCGGACGTACCACCACTTCCATCGCACCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAACGTT  >  NC_000913/2837586‑2837846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A