Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,900,874	T→C	Y95H (TAT→CAT)	yqcE →	putative transport protein YqcE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,900,874	0	T	C	100.0%	667.2 / NA	183	Y95H (TAT→CAT)	yqcE	putative transport protein YqcE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (93/90); total (93/90)

Only 100 of 186 total aligned reads displayed.

TAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGCTG  >  NC_000913/2900740‑2901007

taatGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCa                                                                                                                                  <  2:692390/140‑1 (MQ=255)

   tGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCTACCg                                                                                                                               >  1:2382213/1‑140 (MQ=255)

    gAGTACCTTTGGTATTGCGGCCATTATTCTTTGTGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGc                                                                                                                              >  1:1432563/1‑140 (MQ=255)

    gAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGc                                                                                                                              >  1:1090953/1‑140 (MQ=255)

    gAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGc                                                                                                                              >  2:778586/1‑140 (MQ=255)

    gAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGc                                                                                                                              >  2:1199901/1‑140 (MQ=255)

    gAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGc                                                                                                                              >  2:431108/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  2:2308926/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  1:536637/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  1:8909/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             <  2:1348621/140‑1 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  2:1977316/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  2:2249381/1‑140 (MQ=255)

     aGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCAGTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCt                                                                                                                             >  2:2224961/1‑140 (MQ=255)

       tACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCtgt                                                                                                                           <  2:480757/140‑1 (MQ=255)

         ccTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTgg                                                                                                                         >  1:1813914/1‑140 (MQ=255)

          cTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTggg                                                                                                                        >  2:1890839/1‑140 (MQ=255)

            ttGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTa                                                                                                                      <  2:339930/140‑1 (MQ=255)

            ttGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTa                                                                                                                      >  2:1776913/1‑140 (MQ=255)

             tGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTaa                                                                                                                     >  1:1600344/1‑140 (MQ=255)

             tGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTaa                                                                                                                     >  2:2085084/1‑140 (MQ=255)

              ggTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAAt                                                                                                                    >  1:1413677/1‑140 (MQ=255)

              ggTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAAt                                                                                                                    <  2:1495825/140‑1 (MQ=255)

              ggTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAAt                                                                                                                    <  2:836251/140‑1 (MQ=255)

              ggTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAAt                                                                                                                    <  1:2018999/140‑1 (MQ=255)

              ggTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAAt                                                                                                                    <  1:1794123/140‑1 (MQ=255)

               gTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATg                                                                                                                   >  2:558487/1‑140 (MQ=255)

                tATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGc                                                                                                                  >  2:739930/1‑140 (MQ=255)

                tATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGc                                                                                                                  <  1:313139/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCTCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  2:2108157/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  2:872230/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:91588/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:558487/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:155862/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:616810/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:1502089/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:2121832/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 >  2:203973/1‑140 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  1:1739104/140‑1 (MQ=255)

                 aTTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  2:333216/140‑1 (MQ=255)

                  ttGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGctc                                                                                                                <  2:1090953/140‑1 (MQ=255)

                  ttGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGctc                                                                                                                <  1:1890839/140‑1 (MQ=255)

                    gCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTg                                                                                                              >  2:1132677/1‑140 (MQ=255)

                    gCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTg                                                                                                              >  2:267508/1‑140 (MQ=255)

                    gCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTg                                                                                                              >  2:1380579/1‑140 (MQ=255)

                    gCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTg                                                                                                              >  1:1980515/1‑140 (MQ=255)

                          attattCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCa                                                                                                        >  2:25523/1‑140 (MQ=255)

                            tattCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGct                                                                                                                 <  2:883093/129‑1 (MQ=255)

                                      gCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGc                                                                                            >  2:1214808/1‑140 (MQ=255)

                                        ccccAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGa                                                                                          >  1:997819/1‑140 (MQ=255)

                                         cccAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGAt                                                                                         <  1:444982/140‑1 (MQ=255)

                                            aGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAac                                                                                      <  1:1969578/140‑1 (MQ=255)

                                            aGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAac                                                                                      >  2:1969578/1‑140 (MQ=255)

                                                 cgTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAAcgacga                                                                                 >  2:624801/1‑140 (MQ=255)

                                                 cgTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAAcgacga                                                                                 <  2:536637/140‑1 (MQ=255)

                                                 cgTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAAcgacga                                                                                 >  1:159275/1‑140 (MQ=255)

                                                 cgTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAAcgacga                                                                                 <  2:1432563/140‑1 (MQ=255)

                                                      tttccGATAAATTTTCCCCCCGCAAAATGATTTCTTCCGCGATTATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTa                                                                            <  2:1504252/137‑1 (MQ=255)

                                                           gATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCt                                                                       >  1:1377078/1‑140 (MQ=255)

                                                                aTTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGt                                                                  <  1:2085084/140‑1 (MQ=255)

                                                                aTTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGt                                                                  <  2:1747362/140‑1 (MQ=255)

                                                                aTTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGt                                                                  <  1:1199901/140‑1 (MQ=255)

                                                                          cGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGAt                                                        >  2:2134030/1‑140 (MQ=255)

                                                                          cGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGAt                                                        >  1:2254574/1‑140 (MQ=255)

                                                                          cGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGAt                                                        <  1:2249381/140‑1 (MQ=255)

                                                                           gCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGAtt                                                       >  2:891908/1‑140 (MQ=255)

                                                                            cAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTa                                                      >  2:2321096/1‑140 (MQ=255)

                                                                                    ttACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCa                                              >  1:1073688/1‑140 (MQ=255)

                                                                                       cTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCg                                           <  2:1600344/140‑1 (MQ=255)

                                                                                         tCCGCGATGACCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGtt                                         <  1:1651684/140‑1 (MQ=255)

                                                                                           cgcgATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGc                                       <  1:778586/140‑1 (MQ=255)

                                                                                             cgATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCtt                                     <  2:2081367/140‑1 (MQ=255)

                                                                                             cgATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCtt                                     >  1:899423/1‑140 (MQ=255)

                                                                                             cgATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCtt                                     >  2:2391758/1‑140 (MQ=255)

                                                                                                  atCATTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGa                                >  2:27614/1‑140 (MQ=255)

                                                                                                     aTTACCGGATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCa                             >  1:329480/1‑140 (MQ=255)

                                                                                                            gATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGc                                       <  1:74886/123‑1 (MQ=255)

                                                                                                            gATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAg                      >  1:2035363/1‑140 (MQ=255)

                                                                                                            gATTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAg                      >  1:1269436/1‑140 (MQ=255)

                                                                                                             aTTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGc                                       >  1:816582/1‑122 (MQ=255)

                                                                                                             aTTACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGc                     >  1:369199/1‑140 (MQ=255)

                                                                                                              ttACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCa                    >  2:915709/1‑140 (MQ=255)

                                                                                                              ttACTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCa                    >  1:1161194/1‑140 (MQ=255)

                                                                                                                aCTGGGTCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAg                  <  2:1073688/140‑1 (MQ=255)

                                                                                                                      tCTGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAg                      >  1:367732/1‑130 (MQ=255)

                                                                                                                        tGTTAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAAtt          <  2:1812409/140‑1 (MQ=255)

                                                                                                                          ttAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCa                    >  1:1451271/1‑128 (MQ=255)

                                                                                                                          ttAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCa                    <  1:877304/128‑1 (MQ=255)

                                                                                                                          ttAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCa                    <  2:1451271/128‑1 (MQ=255)

                                                                                                                          ttAATGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTAt        >  1:1520832/1‑140 (MQ=255)

                                                                                                                            aaTGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATgg      <  2:329480/140‑1 (MQ=255)

                                                                                                                             aTGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATggg     <  1:2321096/140‑1 (MQ=255)

                                                                                                                             aTGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATggg     <  1:25523/140‑1 (MQ=255)

                                                                                                                             aTGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATggg     <  2:2007173/140‑1 (MQ=255)

                                                                                                                              tGGCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGc    >  1:1939595/1‑140 (MQ=255)

                                                                                                                               ggCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGCt   >  2:2254587/1‑140 (MQ=255)

                                                                                                                               ggCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGCt   >  1:1240356/1‑140 (MQ=255)

                                                                                                                                gCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGa               <  1:162722/127‑1 (MQ=255)

                                                                                                                                gCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGa               >  2:162722/1‑127 (MQ=255)

                                                                                                                                gCAACGCATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGCtg  >  2:1721448/1‑140 (MQ=255)

TAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTGCTTGGCGATCATAGCGAGCAAGGGAAAATTATGGGCTG  >  NC_000913/2900740‑2901007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A