Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,902,963	G→A	T356T (ACG→ACA)	ygcE →	putative sugar kinase YgcE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,902,963	0	G	A	100.0%	653.3 / NA	182	T356T (ACG→ACA)	ygcE	putative sugar kinase YgcE
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (109/73); total (109/73)

Only 100 of 190 total aligned reads displayed.

GTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCACGACGTA  >  NC_000913/2902827‑2903099

gTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgacactg                                                                                                                                       <  1:1178225/140‑1 (MQ=255)

gTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgacactg                                                                                                                                       <  2:1650365/140‑1 (MQ=255)

 tAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGcgctgacactga                                                                                                                                      >  1:1019214/1‑140 (MQ=255)

  aaTGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTgaa                                                                                                                                     <  2:1545966/140‑1 (MQ=255)

    tGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTgaaga                                                                                                                                   <  2:496979/140‑1 (MQ=255)

    tGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTgaaga                                                                                                                                   <  2:2341432/140‑1 (MQ=255)

     ggTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTgaagaa                                                                                                                                  <  2:514453/140‑1 (MQ=255)

       tCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACa                                                                                                                                >  1:1165437/1‑140 (MQ=255)

       tCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACa                                                                                                                                >  2:1876231/1‑140 (MQ=255)

         tgatgaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAAt                                                                                                                              <  1:830141/140‑1 (MQ=255)

          gatgaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAAtt                                                                                                                             <  2:954672/140‑1 (MQ=255)

          gatgaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAAtt                                                                                                                             <  2:1165437/140‑1 (MQ=255)

            tgaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTAc                                                                                                                           <  1:1699200/140‑1 (MQ=255)

             gaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACg                                                                                                                          <  2:446493/140‑1 (MQ=255)

             gaCGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACg                                                                                                                          <  1:1891541/140‑1 (MQ=255)

                ggTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACa                                                                                                                       <  2:329228/140‑1 (MQ=255)

                 gTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACaa                                                                                                                      >  1:640604/1‑140 (MQ=255)

                  tGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAat                                                                                                                     <  2:472600/140‑1 (MQ=255)

                  tGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAat                                                                                                                     <  1:1876231/140‑1 (MQ=255)

                     tGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATAtg                                                                                                                  >  1:2171046/1‑140 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGTATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatg                                                                                                           <  2:1675811/140‑1 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGAc                                                                                                                        >  2:221543/1‑127 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACa                                                                                                                       >  1:1672158/1‑128 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAat                                                                                                                     <  2:736857/130‑1 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatg                                                                                                           >  1:2278841/1‑140 (MQ=255)

                            gCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatg                                                                                                           <  2:1951335/140‑1 (MQ=255)

                                 ccAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatgaaatg                                                                                                      >  1:1800884/1‑140 (MQ=255)

                                 ccAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatgaaatg                                                                                                      >  1:1744144/1‑140 (MQ=255)

                                 ccAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTaatgaaatg                                                                                                      >  1:2354930/1‑140 (MQ=255)

                                      ccGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCa                                                                                                 >  1:40663/1‑140 (MQ=255)

                                           ggAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAatgaaatgaa                                                                                                    >  2:1804780/1‑132 (MQ=255)

                                           ggAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTg                                                                                            >  2:267926/1‑140 (MQ=255)

                                            gAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGc                                                                                           >  1:1216659/1‑140 (MQ=255)

                                             aaCCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGTATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCg                                                                                          <  1:1111800/140‑1 (MQ=255)

                                             aaCCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCg                                                                                          <  1:1011261/140‑1 (MQ=255)

                                             aaCCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAAAATGTGTAATGAAATGAATCACTTTGCg                                                                                          <  1:177738/140‑1 (MQ=255)

                                              aCCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGa                                                                                         <  1:1001701/140‑1 (MQ=255)

                                              aCCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGa                                                                                         <  1:1300050/140‑1 (MQ=255)

                                                 gTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGa                                                                                         >  1:1607437/1‑137 (MQ=255)

                                                 gTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGc                                                                                      <  2:380334/140‑1 (MQ=255)

                                                   aCAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCAt                                                                                    <  2:40663/140‑1 (MQ=255)

                                                      aaCGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCAtgtg                                                                                 <  2:801622/140‑1 (MQ=255)

                                                                   gATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTggcg                                                                    <  2:640604/140‑1 (MQ=255)

                                                                       ggCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGcggcgg                                                                >  1:1412665/1‑140 (MQ=255)

                                                                       ggCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGcggcgg                                                                >  2:1234589/1‑140 (MQ=255)

                                                                       ggCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGcggcgg                                                                >  2:426164/1‑140 (MQ=255)

                                                                       ggCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGcggcgg                                                                >  2:831660/1‑140 (MQ=255)

                                                                           ttGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCg                                                            <  1:248084/140‑1 (MQ=255)

                                                                            tGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGa                                                           >  1:2212798/1‑140 (MQ=255)

                                                                             gATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGaa                                                          <  1:2316272/140‑1 (MQ=255)

                                                                             gATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGaa                                                          >  2:2080030/1‑140 (MQ=255)

                                                                              gttCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAAc                                                         <  1:765009/139‑1 (MQ=255)

                                                                              aTTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAAc                                                         >  1:336347/1‑140 (MQ=255)

                                                                                  cAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCg                                                     <  2:1092346/140‑1 (MQ=255)

                                                                                   aGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGa                                                    >  1:929948/1‑140 (MQ=255)

                                                                                   aGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGa                                                    <  2:2353771/140‑1 (MQ=255)

                                                                                   aGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGa                                                    >  2:1979041/1‑140 (MQ=255)

                                                                                   aGCATGGATTACGCATGGATATATCGTTCGACACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTAATGGCGGCGGTTCGAACAGCGa                                                    >  2:301921/1‑140 (MQ=255)

                                                                                              cGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGc                                         >  1:2218336/1‑140 (MQ=255)

                                                                                                  tGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGAt                                     <  2:1800884/140‑1 (MQ=255)

                                                                                                   ggATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGAtt                                    >  1:878739/1‑140 (MQ=255)

                                                                                                    gATATATCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGAttt                                   >  2:1463249/1‑140 (MQ=255)

                                                                                                        tatCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGc                               >  1:74540/1‑140 (MQ=255)

                                                                                                         atCGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGcc                              >  1:204107/1‑140 (MQ=255)

                                                                                                           cGTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGa                            <  1:1553892/140‑1 (MQ=255)

                                                                                                            gTTCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGAc                           >  2:1704266/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  1:1820705/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  2:1754568/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  2:1579690/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  2:1426300/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  2:1359238/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  1:561316/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  1:2159410/1‑140 (MQ=255)

                                                                                                             ttCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACg                          >  1:934701/1‑140 (MQ=255)

                                                                                                              tCGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgt                         >  2:2030136/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  2:1627946/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:2351508/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  2:84692/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:222805/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:1290574/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:694752/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:1485648/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  1:1887764/1‑140 (MQ=255)

                                                                                                               cGATACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACgtg                        >  2:10147/1‑140 (MQ=255)

                                                                                                                 aTACTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGtt                      <  2:1433566/140‑1 (MQ=255)

                                                                                                                    cTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCaa                   >  2:385426/1‑140 (MQ=255)

                                                                                                                    cTGGAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCaa                   <  1:1579690/140‑1 (MQ=255)

                                                                                                                       gAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTTATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCt                >  1:371994/1‑140 (MQ=255)

                                                                                                                       gAAAGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCg                             >  1:1082405/1‑127 (MQ=255)

                                                                                                                         aaGCGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTc              <  1:1641879/140‑1 (MQ=255)

                                                                                                                            cGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCgg           >  1:1271930/1‑140 (MQ=255)

                                                                                                                            cGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCgg           >  1:1072843/1‑140 (MQ=255)

                                                                                                                            cGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCgg           >  1:730880/1‑140 (MQ=255)

                                                                                                                            cGTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCgg           >  2:1032054/1‑140 (MQ=255)

                                                                                                                             gTGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGc          <  1:471663/140‑1 (MQ=255)

                                                                                                                              tGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCa         <  2:222805/140‑1 (MQ=255)

                                                                                                                              tGGCGCTGACACTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCa         <  1:899712/140‑1 (MQ=255)

                                                                                                                                 cgctgacactgaAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCacga      >  2:620624/1‑140 (MQ=255)

                                                                                                                                   ctgacactgaAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCacgacg    <  2:2171046/140‑1 (MQ=255)

                                                                                                                                     gacactgaAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCACGACGTa  <  1:1975920/140‑1 (MQ=255)

GTAATGGTCTGATGACGGTGCTGGACTGGCTGACCAATCCGTGGGAACCGTACAAACGCGGGATTATGATCGGCTTTGATTCCAGCATGGATTACGCATGGATATATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACTTTGCGAAGCATGTGATCATTACTGGCGGCGGTTCGAACAGCGATCTGTTTATGCAGATTTTTGCCGACGTGTTCAACCTTCCGGCACGACGTA  >  NC_000913/2902827‑2903099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A