Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,990,434	A→C	intergenic (‑74/‑120)	yqeK ← / → ygeF	protein YqeK/protein YgeF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,990,434	0	A	C	100.0%	754.8 / NA	206	intergenic (‑74/‑120)	yqeK/ygeF	protein YqeK/protein YgeF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (110/96); total (110/96)

Only 100 of 208 total aligned reads displayed.

GTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATAT  >  NC_000913/2990298‑2990570

gTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATcccc                                                                                                                                       <  2:1193522/140‑1 (MQ=255)

         tACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGc                                                                                                                              <  2:201838/140‑1 (MQ=255)

             atatCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGAt                                                                                                                          <  2:1935486/140‑1 (MQ=255)

             atatCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGAt                                                                                                                          <  1:2087141/140‑1 (MQ=255)

               atCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATaa                                                                                                                        <  1:1076320/140‑1 (MQ=255)

                   tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAGCaaa                                                                                                                    <  2:2066453/140‑1 (MQ=255)

                   tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACaaa                                                                                                                    >  1:697208/1‑140 (MQ=255)

                   tGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACaaa                                                                                                                    >  1:1528595/1‑140 (MQ=255)

                        ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGAt                                                                                                                          <  2:293801/129‑1 (MQ=255)

                        ataGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAg                                                                                                               >  2:1804173/1‑140 (MQ=255)

                        ataGACCAATTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAAc                                                                                                                       >  2:949335/1‑132 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGAt                                                                                                                          >  1:1667643/1‑127 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGAt                                                                                                                          <  2:423465/127‑1 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTc                                                                                                             >  2:702933/1‑140 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTc                                                                                                             >  1:1807690/1‑140 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTc                                                                                                             >  1:143968/1‑140 (MQ=255)

                          aGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTAGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTc                                                                                                             >  2:1647414/1‑140 (MQ=255)

                           gACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCa                                                                                                            <  1:1804173/140‑1 (MQ=255)

                            aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAt                                                                                                           >  2:445341/1‑140 (MQ=255)

                            aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAt                                                                                                           >  2:1827033/1‑140 (MQ=255)

                            aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAt                                                                                                           >  1:205684/1‑140 (MQ=255)

                            aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAt                                                                                                           >  2:848237/1‑140 (MQ=255)

                              cATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAg                                                                                                               <  2:1606516/134‑1 (MQ=255)

                              cATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTc                                                                                                         >  1:194330/1‑140 (MQ=255)

                              cATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTc                                                                                                         <  1:1201363/140‑1 (MQ=255)

                                tttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGt                                                                                                              >  1:870363/1‑133 (MQ=255)

                                tttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTa                                                                                                       >  1:1675090/1‑140 (MQ=255)

                                tttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTa                                                                                                       >  2:514333/1‑140 (MQ=255)

                                tttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTa                                                                                                       >  1:101276/1‑140 (MQ=255)

                                 ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATaa                                                                                                                        <  1:1922320/122‑1 (MQ=255)

                                 ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTAc                                                                                                      >  2:1398771/1‑140 (MQ=255)

                                 ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTAc                                                                                                      >  2:1497540/1‑140 (MQ=255)

                                  tCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAtt                                                                                                          >  1:458643/1‑135 (MQ=255)

                                    aTGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTa                                                                                                   <  1:161632/140‑1 (MQ=255)

                                      gAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAAc                                                                                                 <  2:601644/140‑1 (MQ=255)

                                       aaTCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                                                                                                <  1:920960/140‑1 (MQ=255)

                                        aTCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGt                                                                                               >  2:348407/1‑140 (MQ=255)

                                        aTCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGt                                                                                               >  1:2249705/1‑140 (MQ=255)

                                          cTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGtct                                                                                             >  1:1309633/1‑140 (MQ=255)

                                           tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAt                                                                                                           >  1:2342458/1‑125 (MQ=255)

                                           tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                                                                                                >  2:377311/1‑136 (MQ=255)

                                           tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                                                                                                <  1:377311/136‑1 (MQ=255)

                                           tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGtctc                                                                                            >  1:1477398/1‑140 (MQ=255)

                                             cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCa                                                                                                            <  2:1141236/122‑1 (MQ=255)

                                             cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCAtt                                                                                                          <  2:891484/124‑1 (MQ=255)

                                             cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCa                                                                                          >  1:440745/1‑140 (MQ=255)

                                             cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCa                                                                                          >  2:820399/1‑140 (MQ=255)

                                              gAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCAt                                                                                         <  2:1309633/140‑1 (MQ=255)

                                               aaaaTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATa                                                                                        >  1:1504734/1‑140 (MQ=255)

                                               aaaaTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATa                                                                                        <  1:1398771/140‑1 (MQ=255)

                                                  aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACg                                                                                                <  1:586189/129‑1 (MQ=255)

                                                  aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAgg                                                                                     <  1:517443/140‑1 (MQ=255)

                                                  aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAgg                                                                                     <  2:1528595/140‑1 (MQ=255)

                                                  aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAgg                                                                                     <  2:2268245/140‑1 (MQ=255)

                                                   ttCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGt                                                                                    <  1:1497540/140‑1 (MQ=255)

                                                        tGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGatat                                                                               <  2:205684/140‑1 (MQ=255)

                                                            cATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGa                                                                           >  2:1958538/1‑140 (MQ=255)

                                                            cATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGa                                                                           <  1:848237/140‑1 (MQ=255)

                                                            cATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGa                                                                           >  2:250063/1‑140 (MQ=255)

                                                            cATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGa                                                                           <  1:2149356/140‑1 (MQ=255)

                                                            cATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGa                                                                           <  1:348407/140‑1 (MQ=255)

                                                              ttGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACa                                                                         <  1:811741/140‑1 (MQ=255)

                                                               tGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTg                                                                                   >  1:948522/1‑129 (MQ=255)

                                                                    aCCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCa                                                                   >  1:1099055/1‑140 (MQ=255)

                                                                        cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACa                                                                         <  1:2390008/130‑1 (MQ=255)

                                                                        cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                               >  2:986113/1‑140 (MQ=255)

                                                                         acaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGc                                                              >  2:1777029/1‑140 (MQ=255)

                                                                         acaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGc                                                              >  1:959906/1‑140 (MQ=255)

                                                                           aTTTTTACCGTGACTCGATGTTACTGTTCAATGATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTg                                                            >  2:646355/1‑140 (MQ=255)

                                                                           aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTg                                                            >  2:2196855/1‑140 (MQ=255)

                                                                           aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTg                                                            >  2:434478/1‑140 (MQ=255)

                                                                            tttttACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGc                                                           <  2:1898543/140‑1 (MQ=255)

                                                                                tACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAAt                                                       >  1:1885007/1‑140 (MQ=255)

                                                                                       aCTCGATGTTACTGTTCAATGATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                <  1:646355/140‑1 (MQ=255)

                                                                                          cGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTg                                             <  2:1883625/140‑1 (MQ=255)

                                                                                            aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGct                                           <  2:1089472/140‑1 (MQ=255)

                                                                                            aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGct                                           <  2:1955305/140‑1 (MQ=255)

                                                                                            aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGct                                           <  2:2255737/140‑1 (MQ=255)

                                                                                                 aCTGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAAt                                      >  2:797890/1‑140 (MQ=255)

                                                                                                   tGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCa                                    <  1:1777029/140‑1 (MQ=255)

                                                                                                   tGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCa                                    <  1:797890/140‑1 (MQ=255)

                                                                                                   tGTTCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCa                                    >  1:994882/1‑140 (MQ=255)

                                                                                                     ttCAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCaaa                                  <  1:434478/140‑1 (MQ=255)

                                                                                                       cAATAATCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATg                                >  1:756842/1‑140 (MQ=255)

                                                                                                            atCACCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATgagaga                           <  2:928784/140‑1 (MQ=255)

                                                                                                               aCCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                        >  2:850448/1‑140 (MQ=255)

                                                                                                               aCCTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                        >  1:1026226/1‑140 (MQ=255)

                                                                                                                 cTTCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGt                      <  2:517510/140‑1 (MQ=255)

                                                                                                                  ttCCATCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTa                     >  1:1187373/1‑140 (MQ=255)

                                                                                                                       tCAATACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATg                >  2:1747374/1‑140 (MQ=255)

                                                                                                                           tACTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGc            >  2:2381752/1‑140 (MQ=255)

                                                                                                                             cTAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCa          <  2:775156/140‑1 (MQ=255)

                                                                                                                              tAAAATTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCAc         >  1:226109/1‑140 (MQ=255)

                                                                                                                               aaaaTTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg        <  2:1306491/140‑1 (MQ=255)

                                                                                                                               aaaaTTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg        <  1:1957063/140‑1 (MQ=255)

                                                                                                                                 aaTTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGaa      <  1:820399/140‑1 (MQ=255)

                                                                                                                                 aaTTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGaa      <  2:143968/140‑1 (MQ=255)

                                                                                                                                 aaTTAATCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGaa      <  2:1504734/140‑1 (MQ=255)

                                                                                                                                     aaTCCCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat  <  2:1587784/140‑1 (MQ=255)

                                                                                                                                     aaTCCCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat  <  1:294572/140‑1 (MQ=255)

GTCCGAATTTACAATATCATGCATATAGACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATAT  >  NC_000913/2990298‑2990570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A