Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,999,755 |
(C)6→7 |
coding (137/756 nt) |
ygeR ← |
LysM domain‑containing putative peptidase lipoprotein YgeR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,999,749 | 1 | . | C | 99.1%
| 384.0
/ ‑3.5
| 108 | coding (143/756 nt) | ygeR | LysM domain‑containing putative peptidase lipoprotein YgeR |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (57/50); total (58/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.83e-01 |
Only 100 of 116 total aligned reads displayed.
TAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑CCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTCCC > NC_000913/2999615‑2999883
|
tAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑ccccc > 2:2263652/1‑140 (MQ=255)
tAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑ccccc < 1:1592160/140‑1 (MQ=255)
aaTACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑cccccc > 2:396481/1‑140 (MQ=255)
aaTACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑cccccc > 2:2278072/1‑140 (MQ=255)
aaTACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑cccccc > 1:1782972/1‑140 (MQ=255)
tGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑cccccccgttt > 1:1299448/1‑135 (MQ=255)
tGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑cccccccgttt > 1:1367660/1‑135 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCa > 1:1843935/1‑140 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCa < 1:229434/140‑1 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCa > 1:597326/1‑140 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCa > 2:1951159/1‑140 (MQ=255)
tACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCAc > 1:928770/1‑140 (MQ=255)
aCTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATAGAGCGTATCCCCCCC‑GTTTCACg > 1:1703325/1‑140 (MQ=255)
tCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGgtgt > 1:1374215/1‑140 (MQ=255)
gCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTaaa < 2:1810269/140‑1 (MQ=255)
ccacccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACgg < 2:1367660/140‑1 (MQ=255)
cacccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGa > 1:55040/1‑140 (MQ=255)
cccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGc < 1:1516365/140‑1 (MQ=255)
cccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGc < 2:1703325/140‑1 (MQ=255)
ccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGcc < 1:1951159/140‑1 (MQ=255)
caGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCg < 2:1782972/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATa < 1:2263652/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATa < 1:34388/140‑1 (MQ=255)
tAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATa < 2:1374215/140‑1 (MQ=255)
aGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGATATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACg < 2:1661547/140‑1 (MQ=255)
aGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACg > 1:2090028/1‑140 (MQ=255)
gTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATa > 2:1245467/1‑137 (MQ=255)
gTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATa < 1:1245467/137‑1 (MQ=255)
tCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTcc > 2:1222301/1‑140 (MQ=255)
tGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTg > 2:1380436/1‑140 (MQ=255)
tGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTg > 1:441073/1‑140 (MQ=255)
aaTGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGgatgat < 1:482105/140‑1 (MQ=255)
tGGTGTAAGGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGAtt > 2:18879/1‑140 (MQ=255)
tGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGAttt < 2:748746/140‑1 (MQ=255)
gtAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTa > 2:260907/1‑140 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGgatg > 2:1542367/1‑131 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGgatg < 1:1542367/131‑1 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTAc > 2:2307037/1‑140 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTAc > 2:1420232/1‑140 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTAc > 2:327738/1‑140 (MQ=255)
tAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTAc > 1:810239/1‑140 (MQ=255)
gggggggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCg > 2:1638551/1‑140 (MQ=255)
gggggggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCg > 1:1547605/1‑140 (MQ=255)
gggggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGaa > 1:1446157/1‑140 (MQ=255)
ggggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAAc < 2:231398/140‑1 (MQ=255)
gggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGc < 2:1617681/130‑1 (MQ=255)
gggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGc > 1:1617681/1‑130 (MQ=255)
ggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAg > 2:1326599/1‑140 (MQ=255)
ggAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAg > 1:1389844/1‑140 (MQ=255)
gAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTCCCCGAACAGc < 2:507106/140‑1 (MQ=255)
gAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGc < 2:55040/140‑1 (MQ=255)
gAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGc < 2:602233/140‑1 (MQ=255)
gAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGc < 2:1299448/140‑1 (MQ=255)
gCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGcc > 2:2114483/1‑140 (MQ=255)
ccGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCa > 1:1205118/1‑140 (MQ=255)
ttCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCaaaa > 1:435682/1‑140 (MQ=255)
ttCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCaaaa > 2:161621/1‑140 (MQ=255)
tCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAg > 1:2267400/1‑140 (MQ=255)
tCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAg < 2:810239/140‑1 (MQ=255)
cAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGc > 2:1306928/1‑140 (MQ=255)
gcgcCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTcc < 1:2278072/140‑1 (MQ=255)
cgcCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCa > 1:2350357/1‑140 (MQ=255)
gcCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCaa < 2:1446157/140‑1 (MQ=255)
ccAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAAc > 1:609410/1‑140 (MQ=255)
gTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGa < 2:435682/140‑1 (MQ=255)
tttttttTCGCTGGTTCCCGTGGTGCTCGAAATACGATATAGTTTTT‑CCCCCCTGTTTCACGGTGTAAACGGAGCCGGAATACGTTCTTGTATCGGATGATTTGCTACCCGAACAGCCCGCAAAAAGCAGTCCAAGCGAt < 2:1205118/137‑1 (MQ=255)
ttCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGAt < 1:1306928/140‑1 (MQ=255)
cTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaa < 1:18879/140‑1 (MQ=255)
ttttACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaac < 1:161621/140‑1 (MQ=255)
ttttACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaac < 1:2215257/140‑1 (MQ=255)
ttACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaacaa < 2:1547605/140‑1 (MQ=255)
ttACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaacaa > 2:1802948/1‑140 (MQ=255)
tACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATaacaac < 1:2114483/140‑1 (MQ=255)
aCGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAacaaca < 1:1117501/140‑1 (MQ=255)
aCGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAacaaca < 1:988488/140‑1 (MQ=255)
gCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTc > 1:52246/1‑123 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGAt < 2:2263768/127‑1 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGAt > 1:2263768/1‑127 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGa > 1:2047972/1‑140 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGa > 1:516403/1‑140 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGa > 1:588514/1‑140 (MQ=255)
gTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGa > 1:82635/1‑140 (MQ=255)
cccGTGGTGCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATAc > 2:752626/1‑140 (MQ=255)
tggtgCGCGAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCag < 1:260907/140‑1 (MQ=255)
tgCGCGAAATACGATATAGCGTAT‑CCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGAt > 1:126849/1‑140 (MQ=255)
cgcgAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGAtt > 2:117784/1‑140 (MQ=255)
cgcgAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGAtt > 1:1356383/1‑140 (MQ=255)
cgcgAAATACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGAtt > 1:1726561/1‑140 (MQ=255)
tACGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTAtt < 2:2308078/140‑1 (MQ=255)
aCGATATAGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTc < 1:1802948/140‑1 (MQ=255)
tataGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGc < 1:903639/140‑1 (MQ=255)
aGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTc > 1:796629/1‑140 (MQ=255)
aGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTc > 1:1094823/1‑140 (MQ=255)
aGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTc > 1:2090965/1‑140 (MQ=255)
aGCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACCATACCCAGAGATTTTTTATTCAGGCGTc > 1:561148/1‑140 (MQ=255)
gCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTcc < 1:1677910/140‑1 (MQ=255)
gCGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTcc < 2:796629/140‑1 (MQ=255)
cGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTccc > 2:282177/1‑140 (MQ=255)
cGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTccc < 1:1380436/140‑1 (MQ=255)
cGTATCCCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTccc > 1:2014248/1‑140 (MQ=255)
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TAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAA‑GGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTAT‑CCCCCC‑GTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGTATCGGATGATTTGCTACCCGAACAGCCCGCCAAAAGCAGTCCAACCGATAACAACATCACGATACCCAGAGATTTTTTATTCAGGCGTCCC > NC_000913/2999615‑2999883
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
