Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,003,479	(G)_6→7	coding (866/879 nt)	xdhB →	putative xanthine dehydrogenase FAD‑binding subunit XdhB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,003,473	1	.	G	99.0%	358.8 / ‑3.6	102	coding (860/879 nt)	xdhB	putative xanthine dehydrogenase FAD‑binding subunit XdhB
Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (53/48); total (53/49)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 119 total aligned reads displayed.

TGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAGTG  >  NC_000913/3003335‑3003606

tGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCgcggc‑‑g                                                                                                                                      <  2:1165613/140‑1 (MQ=255)

tGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCgcggc‑‑g                                                                                                                                      <  1:515515/140‑1 (MQ=255)

tGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCgcggc‑‑g                                                                                                                                      <  1:453631/140‑1 (MQ=255)

tGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCCTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCgcggc‑‑g                                                                                                                                      <  1:1351794/140‑1 (MQ=255)

 gCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGcggc‑‑gg                                                                                                                                     >  1:629426/1‑140 (MQ=255)

   aaaCGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑gggg                                                                                                                                   <  1:1237661/140‑1 (MQ=255)

   aaaCGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑gggg                                                                                                                                   >  2:1007674/1‑140 (MQ=255)

        cTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑gggggggga                                                                                                                              >  2:1617730/1‑137 (MQ=255)

         tGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCCGTAAAGAGTTTCGGCTGCCTCTCATCCAGACGATGACCAAAAAAGTGAATAACGAAGCCGTCCGCGCGGC‑‑ggggggggaa                                                                                                                             >  2:2197698/1‑136 (MQ=255)

           gAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAAt                                                                                                                            <  1:2121541/140‑1 (MQ=255)

           gAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑GGGGGGgaaaat                                                                                                                           <  1:1397193/140‑3 (MQ=255)

               cTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCa                                                                                                                        <  1:1007674/140‑1 (MQ=255)

               cTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCa                                                                                                                        <  1:1698526/140‑1 (MQ=255)

               cTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCa                                                                                                                        <  1:127174/140‑1 (MQ=255)

                 aTCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAAt                                                                                                                      >  1:73267/1‑140 (MQ=255)

                     gCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAAt                                                                                                                  <  2:703945/140‑1 (MQ=255)

                        aaTCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATcac                                                                                                               >  1:791836/1‑140 (MQ=255)

                         aTCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATcaca                                                                                                              >  1:1757541/1‑140 (MQ=255)

                         aTCTGTCC‑GCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAg                                                                                                             >  1:1987310/1‑140 (MQ=255)

                            tGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCg                                                                                                           <  2:73267/140‑1 (MQ=255)

                             gTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAAATGCAATGAAACACAGCGa                                                                                                          >  1:596628/1‑140 (MQ=255)

                                  gCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAGCGAAACaa                                                                                                     >  1:575650/1‑140 (MQ=255)

                                  gCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACaa                                                                                                     <  1:1657211/140‑1 (MQ=255)

                                   cAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAGCGAAACAAt                                                                                                    >  1:252788/1‑140 (MQ=255)

                                   cAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAAt                                                                                                    <  1:1700473/140‑1 (MQ=255)

                                     aGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTa                                                                                                  <  1:1635643/140‑1 (MQ=255)

                                       aTGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTAcc                                                                                                <  1:448292/140‑1 (MQ=255)

                                        tGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGTCG‑GGGGGGGAAAATGCAATGAATCACAACGAAACAAATAACa                                                                                               >  2:1657211/1‑140 (MQ=255)

                                        tGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAGCg                                                                                                           >  1:660953/1‑128 (MQ=255)

                                        tGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAAACACAGCGAAACAATTACCa                                                                                               >  1:2037736/1‑140 (MQ=255)

                                        tGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCg                                                                                                           <  2:660953/128‑1 (MQ=255)

                                         gTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAGCGAAACAATTACCAt                                                                                              >  1:181759/1‑140 (MQ=255)

                                           cGCCCCGCGTTCTTCATGGCGGGCCAGTAAAAAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAAATGCAATGAAAAACAGCGAAAAAAATACCATcc                                                                                            >  2:1164408/1‑139 (MQ=255)

                                             ccccGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAAACACAGCGAAACAATTACCATCGaa                                                                                          >  1:698837/1‑140 (MQ=255)

                                             ccccGCGTTCTTCATGGCGGGCCAGTAAAGAGGTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAAATGCAATGAAATACAACGAAAAAAATACCAACGaa                                                                                          >  2:211388/1‑140 (MQ=255)

                                               ccGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATg                                                                                        <  1:1735452/140‑1 (MQ=255)

                                                 gcgTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCa                                                                                      <  1:1164408/140‑1 (MQ=255)

                                                  cgTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTGCAATGAATCACAGCGAAACAATTACCATCGAAAGCAc                                                                                     >  1:801740/1‑140 (MQ=255)

                                                              cGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGAt                                                                         >  1:822399/1‑140 (MQ=255)

                                                                 gCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGGAAATTTCAATGAAACACAGCGAAACAATTACCATCCAATGCACCATTAACGGGGTGcc                                                                      >  1:1115461/1‑140 (MQ=255)

                                                                 gCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGcc                                                                      >  1:834840/1‑140 (MQ=255)

                                                                 gCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGGGATTAGCGAAGCCGCCGCCGCGGCG‑GGGGGGGAAAATTCAAAGAATCAAAGCGAAACAAATACCATCGAAAGTACCCTTTACgggggggc                                                                      >  2:152061/1‑135 (MQ=255)

                                                                     gTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCtttt                                                                  <  1:1919239/140‑1 (MQ=255)

                                                                           agTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCtt                                                            >  1:1276780/1‑140 (MQ=255)

                                                                           agTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCtt                                                            <  1:1509092/140‑1 (MQ=255)

                                                                           agTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCtt                                                            >  2:1030995/1‑140 (MQ=255)

                                                                             tttCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCa                                                          >  2:2172195/1‑140 (MQ=255)

                                                                              ttCGTCTGCATCTCATCCAGACGACGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAc                                                         <  1:995272/140‑1 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCGGGGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcg                                                        >  2:1261890/1‑140 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCt                                                             <  2:1034997/134‑1 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCt                                                             >  1:1034997/1‑134 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgc                                                       >  2:2400859/1‑140 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgc                                                       <  2:1439351/140‑1 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgc                                                       >  2:131441/1‑140 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgc                                                       <  1:2387526/140‑1 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgc                                                       >  2:483631/1‑140 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcg                                                        <  1:648050/139‑1 (MQ=255)

                                                                                cGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcg                                                        >  2:648050/1‑139 (MQ=255)

                                                                                  tCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCAcgccg                                                     <  2:1356112/140‑1 (MQ=255)

                                                                                     gCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCAc                                                  >  2:852259/1‑140 (MQ=255)

                                                                                      cATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCAcc                                                 <  2:575650/140‑1 (MQ=255)

                                                                                            aTCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCGGGGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCa                                            >  2:1344182/1‑140 (MQ=255)

                                                                                               cAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgcc                                        <  2:834840/140‑1 (MQ=255)

                                                                                                aGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgccg                                       >  1:428590/1‑140 (MQ=255)

                                                                                                aGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgccc                                       >  1:1144952/1‑139 (MQ=255)

                                                                                                 gACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCGGGGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgccg                                       >  2:1272282/1‑140 (MQ=255)

                                                                                                  aCGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgccgcc                                     >  2:557193/1‑139 (MQ=255)

                                                                                                  aCGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGct                                     >  1:1533434/1‑140 (MQ=255)

                                                                                                   cGATGACC‑AAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   >  2:1227741/1‑140 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   <  2:252788/140‑1 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   <  2:428590/140‑1 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   >  2:207549/1‑140 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   <  1:1127397/140‑1 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   <  1:43755/140‑1 (MQ=255)

                                                                                                    gATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGctct                                   <  2:937755/140‑1 (MQ=255)

                                                                                                      tGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCGGGGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCtctc                                  >  1:403009/1‑140 (MQ=255)

                                                                                                      tGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCg                                 >  2:1296430/1‑140 (MQ=255)

                                                                                                      tGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCg                                 >  2:881203/1‑140 (MQ=255)

                                                                                                       gACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCgg                                >  2:1827570/1‑140 (MQ=255)

                                                                                                        aCCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCAcgcc                                        <  1:1945133/131‑1 (MQ=255)

                                                                                                        aCCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGa                               <  1:1859166/140‑1 (MQ=255)

                                                                                                            aaaaaGTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTa                           >  2:377916/1‑140 (MQ=255)

                                                                                                                 gTGATTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCcg                      <  2:2186115/140‑1 (MQ=255)

                                                                                                                  tGATTAGCGAAGCCGTCGCCGCGGCGGGGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCcg                      <  1:1272282/140‑1 (MQ=255)

                                                                                                                    aTTAGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGa                   >  2:33154/1‑140 (MQ=255)

                                                                                                                       aGCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAACTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACa                >  1:380786/1‑140 (MQ=255)

                                                                                                                        gCGAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACaa               <  1:377916/140‑1 (MQ=255)

                                                                                                                          gAAGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAgg             <  1:1296430/140‑1 (MQ=255)

                                                                                                                           aaGCCGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGa            >  2:412396/1‑140 (MQ=255)

                                                                                                                              ccGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTg         >  2:1355880/1‑140 (MQ=255)

                                                                                                                              ccGTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTg         >  2:904286/1‑140 (MQ=255)

                                                                                                                               catCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGc        >  2:381647/3‑140 (MQ=255)

                                                                                                                                gTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCt       <  2:785198/140‑1 (MQ=255)

                                                                                                                                gTCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCt       <  1:424561/140‑1 (MQ=255)

                                                                                                                                 tCGCCGCGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTa      <  1:2172195/140‑1 (MQ=255)

                                                                                                                                  cgccgcGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCACCGAATGCACCATTAACGGGAGGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTaa     <  2:617979/140‑1 (MQ=255)

                                                                                                                                   gccgcGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAg    <  2:1533434/140‑1 (MQ=255)

                                                                                                                                   gccgcGGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAg    <  2:1115461/140‑1 (MQ=255)

                                                                                                                                     cgcgGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAgtg  <  1:881203/140‑1 (MQ=255)

                                                                                                                                     cgcgGCG‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAgtg  <  1:2272546/140‑1 (MQ=255)

TGCAAACGCTGGAAGCTATCAGCGAATCTGTCCTGCAAGATGTCGCCCCGCGTTCTTCATGGCGGGCCAGTAAAGAGTTTCGTCTGCATCTCATCCAGACGATGACCAAAAAAGTGATTAGCGAAGCCGTCGCCGCGGC‑‑GGGGGGAAAATTGCAATGAATCACAGCGAAACAATTACCATCGAATGCACCATTAACGGGATGCCTTTTCAGCTTCACGCCGCACCAGGCACGCCGCTCTCGGAATTACTCCGCGAACAAGGACTGCTAAGTG  >  NC_000913/3003335‑3003606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A