Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,060,772 |
(T)8→9 |
intergenic (+126/‑78) |
argP → / → scpA |
DNA‑binding transcriptional dual regulator ArgP/methylmalonyl‑CoA mutase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,060,764 | 1 | . | T | 94.4%
| 608.5
/ 21.6
| 179 | intergenic (+118/‑86) | argP/scpA | DNA‑binding transcriptional dual regulator ArgP/methylmalonyl‑CoA mutase |
| Reads supporting (aligned to +/- strand): ref base . (6/4); new base T (91/78); total (97/82) |
| Fisher's exact test for biased strand distribution p-value = 7.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
Only 100 of 192 total aligned reads displayed.
AAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAATTGAGCC > NC_000913/3060626‑3060898
|
aaaGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑t > 2:291482/1‑140 (MQ=255)
aaaGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑t > 1:347279/1‑140 (MQ=255)
cTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑ttttttt > 2:878540/1‑140 (MQ=255)
cTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑ttttttt > 1:1101399/1‑140 (MQ=255)
cTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑ttttttt > 1:412394/1‑140 (MQ=255)
tCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑tttttttttgct < 1:1740750/140‑5 (MQ=255)
ggATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGc > 2:221266/1‑140 (MQ=255)
ggATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑tttttttttgct < 1:2076377/137‑5 (MQ=255)
gATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCg > 2:321540/1‑140 (MQ=255)
aTCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACaa > 1:2139028/1‑140 (MQ=255)
aTCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACaaa > 2:1953157/1‑140 (MQ=255)
aTCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACaaa < 1:321540/140‑1 (MQ=255)
tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCAc > 2:1090582/1‑140 (MQ=255)
tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCAc > 2:1943172/1‑140 (MQ=255)
tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCAc > 1:1749458/1‑140 (MQ=255)
cAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACg > 1:2383221/1‑140 (MQ=255)
tGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAg > 1:201448/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 1:631951/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 1:115928/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 2:1686143/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 2:1453462/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt < 1:1702192/140‑1 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 1:1520161/1‑140 (MQ=255)
ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGCCGACAAACCCACGTAAAAAGCt > 1:257336/1‑140 (MQ=255)
cTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTc < 2:2042497/140‑1 (MQ=255)
gATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCa > 1:937503/1‑140 (MQ=255)
aTAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACGAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCAcc > 1:2105679/1‑140 (MQ=255)
aTAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCt > 1:370406/1‑136 (MQ=255)
gCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGt < 2:774419/140‑1 (MQ=255)
caTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAg < 2:212282/137‑1 (MQ=255)
atatCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGgcg < 1:1453462/140‑1 (MQ=255)
atatCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGgcg < 2:1752186/140‑1 (MQ=255)
tatCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGgcg > 2:2281809/1‑140 (MQ=255)
atCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCa > 2:391311/1‑140 (MQ=255)
tCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCaa < 1:1017752/140‑1 (MQ=255)
aGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCaaa < 2:2139028/140‑1 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAGCCCACGTAAAAAGCTCACCGTAGGCGCAAATa > 2:1755721/1‑140 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTc > 1:1848891/1‑123 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAc > 2:50977/1‑140 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAc > 2:1280065/1‑140 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAc > 2:514160/1‑140 (MQ=255)
gCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAc > 2:2391204/1‑140 (MQ=255)
cGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAcc < 1:873080/140‑1 (MQ=255)
ttGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATAcc > 2:2005080/1‑138 (MQ=255)
ttGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCt > 2:800624/1‑140 (MQ=255)
ttGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCt < 2:2404853/140‑1 (MQ=255)
gTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCa > 2:1990650/1‑140 (MQ=255)
gTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCa > 2:111313/1‑140 (MQ=255)
gTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCa > 2:1221891/1‑140 (MQ=255)
gTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCa > 2:305123/1‑140 (MQ=255)
gTCCTCACTTCTTTTTGTATTCCTTGAATAACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGgc < 2:2224652/127‑1 (MQ=255)
cACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTg > 1:878593/1‑140 (MQ=255)
cACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTg > 2:1550580/1‑140 (MQ=255)
aCTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCTTTTTGa < 2:1172817/140‑1 (MQ=255)
aCTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGa < 1:1943172/140‑1 (MQ=255)
gTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGtttt > 1:1069994/1‑140 (MQ=255)
gTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTa < 1:2293942/140‑1 (MQ=255)
tATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTAc < 1:84826/140‑1 (MQ=255)
tATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTAc < 2:1893747/140‑1 (MQ=255)
aTTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACg > 2:368071/1‑140 (MQ=255)
aTTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACg < 1:514160/140‑1 (MQ=255)
aTTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACg < 1:1990650/140‑1 (MQ=255)
ttCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGa > 2:5427/1‑140 (MQ=255)
tCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGa > 1:1075441/1‑140 (MQ=255)
tCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGa < 1:49259/140‑1 (MQ=255)
ccTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAg < 2:648158/140‑1 (MQ=255)
ccTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAg > 2:2382484/1‑140 (MQ=255)
cTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGc < 1:1297137/140‑1 (MQ=255)
tGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCaa > 2:1404500/1‑140 (MQ=255)
tGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCaa < 2:115928/140‑1 (MQ=255)
gAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCATTTTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCaa < 1:2281809/140‑1 (MQ=255)
gAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCaaa > 1:1111549/1‑140 (MQ=255)
aaTCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAaat < 2:450086/140‑1 (MQ=255)
atcacatcacAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAaata < 2:2105679/140‑1 (MQ=255)
catcacaAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGt > 2:1794982/1‑140 (MQ=255)
atcacaAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTAc < 1:1554803/125‑1 (MQ=255)
atcacaAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTc > 2:570944/1‑140 (MQ=255)
atcacaAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTc > 2:176761/1‑140 (MQ=255)
cacaAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTa < 2:818827/140‑1 (MQ=255)
aaaaTAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACg > 2:1331680/1‑140 (MQ=255)
aTAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGc < 1:2258302/140‑1 (MQ=255)
tAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCa < 1:34027/140‑1 (MQ=255)
aGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAgg < 1:795426/140‑1 (MQ=255)
aCAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGGGAAAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTAAGAAGCAAATAATGTCTAACGTGCAGGa > 2:206683/1‑140 (MQ=255)
aaTCTCAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTg < 1:1353821/140‑1 (MQ=255)
tctcAGGCGGCAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGc < 1:305123/140‑1 (MQ=255)
tctcAGGCGACAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGa > 1:1130313/1‑135 (MQ=255)
cggcAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCt < 1:2215924/140‑1 (MQ=255)
gcAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCGTTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTg > 2:2310974/1‑140 (MQ=255)
gcAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTg > 2:271338/1‑140 (MQ=255)
cAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGc < 1:565504/140‑1 (MQ=255)
cAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGc < 1:1794982/140‑1 (MQ=255)
cAAAAAACGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGc < 1:1195173/140‑1 (MQ=255)
aaaaaaCGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGcc < 1:1754845/140‑1 (MQ=255)
aaCGACGTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCcaaca < 2:1601017/140‑1 (MQ=255)
acgacgTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCcaacaa < 1:754614/140‑1 (MQ=255)
gTCTGAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAAt > 2:1072726/1‑140 (MQ=255)
gAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAATTGAg < 1:391311/140‑1 (MQ=255)
gAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAATTGAg < 1:1404500/140‑1 (MQ=255)
gAATGCAT‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAATTGAg < 2:174868/140‑1 (MQ=255)
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AAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAGGCGGCAAAAAACGACGTCTGAATGCA‑‑TTTTTTTTGCTGGCGACAAACCCACGTAAAAAGCTCACCGTAGGCGCAAATACCCTCATTTTGATTGCGTTTTACGGAGCAAATAATGTCTAACGTGCAGGAGTGGCAACAGCTTGCCAACAAGGAATTGAGCC > NC_000913/3060626‑3060898
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
