Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,177,509 |
(C)6→7 |
coding (402/630 nt) |
nudF ← |
ADP‑sugar pyrophosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,177,503 | 1 | . | C | 96.5%
| 293.5
/ 2.7
| 85 | coding (408/630 nt) | nudF | ADP‑sugar pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (56/26); total (57/28) |
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 |
Only 100 of 101 total aligned reads displayed.
CCTCTTCTACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑CCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATC > NC_000913/3177364‑3177632
|
ccTCTTCTACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑g < 1:1720915/140‑1 (MQ=255)
ccTCTTCTACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑g < 2:1886816/140‑1 (MQ=255)
tctACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTGACTGGT‑G‑ccccc < 2:1526110/140‑1 (MQ=255)
tctACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑ccccc < 2:1343940/140‑1 (MQ=255)
ccACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑ccccc‑ccggg < 1:2148815/140‑5 (MQ=255)
ccACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑ccccc‑ccggg < 1:744433/140‑5 (MQ=255)
aCTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCt > 1:1854299/1‑140 (MQ=255)
tGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑g > 2:78853/1‑126 (MQ=255)
tGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑g < 1:78853/126‑1 (MQ=255)
tGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTg > 1:66906/1‑140 (MQ=255)
tGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTg > 1:296021/1‑140 (MQ=255)
tGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTg > 1:45344/1‑140 (MQ=255)
gTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGcc > 1:2256191/1‑140 (MQ=255)
tGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg > 1:779894/1‑140 (MQ=255)
tGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg < 2:1704411/140‑1 (MQ=255)
tGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg < 1:1330189/140‑1 (MQ=255)
tGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg > 2:2207819/1‑140 (MQ=255)
tGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg > 1:1772562/1‑140 (MQ=255)
gCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGa < 2:573798/140‑1 (MQ=255)
ccTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGaa > 2:1681949/1‑140 (MQ=255)
cTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGaaa > 1:203787/1‑140 (MQ=255)
cTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGaaa < 1:1325734/140‑1 (MQ=255)
gTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg > 2:822547/1‑135 (MQ=255)
gTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAgg < 1:822547/135‑1 (MQ=255)
gTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACt > 1:2397315/1‑140 (MQ=255)
gTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACt < 2:45344/140‑1 (MQ=255)
gTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCG‑CCACCATAATTGACGAACCCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAAcct > 1:959860/1‑138 (MQ=255)
ttCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACtt < 1:998349/140‑1 (MQ=255)
tCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTa > 1:2132402/1‑140 (MQ=255)
tCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTa > 2:1154202/1‑140 (MQ=255)
tCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTa > 1:2132403/1‑140 (MQ=255)
tCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTa > 1:1402726/1‑140 (MQ=255)
tCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTa > 1:1587879/1‑140 (MQ=255)
cccGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTaa > 2:1670880/1‑140 (MQ=255)
cccGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCCCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTaa < 2:581098/140‑1 (MQ=255)
cGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAaca < 2:553538/140‑1 (MQ=255)
cGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAaca < 1:1670880/140‑1 (MQ=255)
ttACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCgg < 2:779894/140‑1 (MQ=255)
caTGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGt < 1:1154202/140‑1 (MQ=255)
caTGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGt < 2:1587879/140‑1 (MQ=255)
caTGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGt < 1:270176/140‑1 (MQ=255)
aCGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGtt > 1:1653043/1‑140 (MQ=255)
cgcgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTg < 1:1807796/132‑1 (MQ=255)
cgcgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTg > 2:1807796/1‑132 (MQ=255)
cgcgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGttt > 1:1373348/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGTGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 2:1557110/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACAcc < 1:1264081/124‑1 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACAcc > 2:1264081/1‑124 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTgg > 2:2355642/1‑131 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTgg < 1:2355642/131‑1 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTg < 1:1518440/139‑1 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTg > 2:1518440/1‑139 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 1:63114/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 2:986794/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 1:1711188/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 1:2066465/1‑140 (MQ=255)
cgAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑CCCCCNNGNNCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGa > 1:1386093/1‑140 (MQ=255)
tCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCa > 1:665806/1‑140 (MQ=255)
tCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCAGAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCa > 2:1646945/1‑140 (MQ=255)
tttttCATCAGCCAGCCCGTAAATCCCGCTGGGGGTCGTGGCGCCCCTTCCCCCCACCATAATTGACGAACGCTCACTGGTCC‑CCCCC‑CGGGCTTGCCAGGAAACTTAACACCGTTTTGGTCCGTTTGACTATCAGTccc < 2:1386093/139‑1 (MQ=255)
tttCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGc > 2:486267/1‑140 (MQ=255)
catcaGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCctc > 1:2338702/1‑140 (MQ=255)
ccAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAAt > 1:114078/1‑140 (MQ=255)
aCCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCt > 2:644026/1‑140 (MQ=255)
tGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTcgc > 2:1041017/1‑140 (MQ=255)
aaaccccGCTTGCGGTGGTGGCGCCCCCTCCCCCCACCATAATTGACGACCGCTCACTGGTCC‑CCCCC‑CGGGCTTGCCAGAAAACTTACCCCCGGTTTGGTCCTTTTGACTATCAGTCCCGCCTCTTCAATCGCTTcgcg < 2:1653043/135‑1 (MQ=255)
cGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGc > 2:272978/1‑140 (MQ=255)
cGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGc > 2:757696/1‑140 (MQ=255)
gCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACgggga > 2:1633741/1‑138 (MQ=255)
gCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCa > 1:2296830/1‑140 (MQ=255)
tggCGGTCGGGCCGCCCCCTCCCCCCACCATAATTGACGAACGCTCACTGGTCC‑CCCCC‑CGGGCTTGCAAGGAAACTTAACCCCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAAc < 2:1373348/138‑1 (MQ=255)
gCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACAt > 2:1514359/1‑140 (MQ=255)
gTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCtt > 1:1680600/1‑140 (MQ=255)
cGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTcc > 1:2081912/1‑140 (MQ=255)
ggggCGCCCACTCCCCCCACCATAATTGACGACCGCTCACTGGT‑GCCCCCC‑CGGGTTTGCAAGAAAACTTAACCCGGGTTTGGCCCTTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCca < 2:1942773/138‑1 (MQ=255)
gTGGCGCCCACTCCCCCCACCATAATTGACGACCGCTCCCTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACCCCGTTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCca < 1:1283145/140‑1 (MQ=255)
tGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCcac > 1:2260477/1‑140 (MQ=255)
tGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCcac > 2:467696/1‑140 (MQ=255)
ccctcccccccccATAATTGACGACCGCTCCCTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACCCCGGTTTGGTCCTTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCa < 2:907674/133‑1 (MQ=255)
cACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCa > 2:561840/1‑140 (MQ=255)
cACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCa > 2:98932/1‑140 (MQ=255)
cACTCCCCCCACCATAATTGACGAACGCTCACTGGTCC‑CCCCC‑CGGGCTTGCCAGGAAACTTAACCCCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCa < 1:475028/140‑1 (MQ=255)
aCTTCGCCCACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCAc < 1:98932/140‑1 (MQ=255)
ccccACCATAATTGACGACCGCTCACGGGT‑GCCCCCC‑CGGGCTTGCCAGAAAACTTACCCCCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCctct < 2:1089850/139‑1 (MQ=255)
ccccACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCctct < 2:2066465/139‑1 (MQ=255)
cccACCATAATTGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCtt < 1:486267/140‑1 (MQ=255)
ttGACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATccc > 2:1512831/1‑140 (MQ=255)
gACGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACCCCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCgg < 2:2256191/140‑1 (MQ=255)
cGAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCa > 1:2341852/1‑140 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCgg > 2:44590/1‑137 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCgg < 1:44590/137‑1 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCaa > 1:1391114/1‑140 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCaa > 1:1498864/1‑140 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCaa < 2:1680600/140‑1 (MQ=255)
gAACGCTCACTGGT‑GCCCCCC‑CGGACTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCaa > 2:2327573/1‑140 (MQ=255)
cGCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCa > 2:1013349/1‑140 (MQ=255)
gCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCAt < 1:467696/140‑1 (MQ=255)
gCTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCAt < 2:2081912/140‑1 (MQ=255)
cTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCAtc > 2:177588/1‑140 (MQ=255)
cTCACTGGT‑GCCCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCAtc > 1:2279507/1‑140 (MQ=255)
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CCTCTTCTACCCACTGGTATGCCTGTTCCCGGCTTACCACATGAACGCGAATATCTTCGTTTTCATCAGCCAGACCGTGAATACCGCTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGT‑G‑CCCCC‑CGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAATCATCCCGGCAACCATC > NC_000913/3177364‑3177632
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
